Gm24045 Gene Detail

Summary

• Symbol
  Gm24045
• Name
  predicted gene, 24045

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:5453822
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:114845161-114845258 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453822	unclassified non-coding RNA gene	Chr4:114845161-114845258 (+)
129S1/SvImJ	ENSMUSG00200050503	unclassified non-coding RNA gene	Chr4:108727711-108727808 (+)
A/J	ENSMUSG00195047879	unclassified non-coding RNA gene	Chr4:110061062-110061159 (+)
AKR/J	ENSMUSG00220012405	unclassified non-coding RNA gene	Chr4:109330986-109331083 (+)
BALB/cJ	ENSMUSG00180047623	unclassified non-coding RNA gene	Chr4:108074173-108074270 (+)
C3H/HeJ	ENSMUSG00175041375	unclassified non-coding RNA gene	Chr4:109088674-109088771 (+)
C57BL/6NJ	ENSMUSG00215035031	unclassified non-coding RNA gene	Chr4:110215583-110215680 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008748	unclassified non-coding RNA gene	Chr4:105433089-105433193 (+)
CAST/EiJ	ENSTCUG00005022888	unclassified non-coding RNA gene	Chr4:108866147-108866244 (+)
CBA/J	ENSMUSG00210053409	unclassified non-coding RNA gene	Chr4:108702237-108702334 (+)
DBA/2J	ENSMUSG00185050693	unclassified non-coding RNA gene	Chr4:110224487-110224584 (+)
FVB/NJ	ENSMUSG00205045648	unclassified non-coding RNA gene	Chr4:108273840-108273937 (+)
JF1/MsJ	ENSUMUG00000050548	unclassified non-coding RNA gene	Chr4:110175605-110175701 (+)
LP/J	ENSMUSG00230046086	unclassified non-coding RNA gene	Chr4:113545107-113545204 (+)
NOD/ShiLtJ	ENSMUSG00190048251	unclassified non-coding RNA gene	Chr4:108071637-108071734 (+)
NZO/HlLtJ	ENSMUSG00225011584	unclassified non-coding RNA gene	Chr4:119032496-119032593 (+)
PWK/PhJ	ENSLUMG00010047497	unclassified non-coding RNA gene	Chr4:107569821-107569917 (+)
SPRET/EiJ	ENSMSPG00010028981	unclassified non-coding RNA gene	Chr4:109721217-109721314 (+)
WSB/EiJ	ENSIUOG00005043837	unclassified non-coding RNA gene	Chr4:108384872-108384969 (+)

Homology

• Gene Tree
  Gm24045
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm24045
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000065047 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000065047	Ensembl Gene Model | MGI Sequence Detail	98	C57BL/6J
transcript	ENSMUST00000083113	Ensembl | MGI Sequence Detail	98	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm24045:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38423	Chr4:114843861-114843881 (+)	-1,290 bp
Tssr38424	Chr4:114844456-114844503 (+)	-681 bp
Tssr38425	Chr4:114844521-114844534 (+)	-633 bp