Mir5625 Gene Detail

Summary

• Symbol
  Mir5625
• Name
  microRNA 5625
• Synonyms
  mmu-mir-5625

• Feature Type
  miRNA gene
• IDs
  MGI:5453707
  NCBI Gene: 100885838
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:30805280-30805359 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453707	miRNA gene	Chr5:30805280-30805359 (+)
129S1/SvImJ	ENSMUSG00200014387	miRNA gene	Chr5:26305365-26305444 (+)
A/J	ENSMUSG00195050576	miRNA gene	Chr5:25753545-25753624 (+)
AKR/J	ENSMUSG00220009009	miRNA gene	Chr5:25766539-25766618 (+)
BALB/cJ	ENSMUSG00180038548	miRNA gene	Chr5:25558142-25558221 (+)
C3H/HeJ	ENSMUSG00175049914	miRNA gene	Chr5:27532487-27532566 (+)
C57BL/6NJ	ENSMUSG00215041063	miRNA gene	Chr5:26268150-26268229 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007939	miRNA gene	Chr5:25154423-25154502 (+)
CAST/EiJ	ENSTCUG00005025819	miRNA gene	Chr5:25741701-25741780 (+)
CBA/J	ENSMUSG00210049192	miRNA gene	Chr5:26505661-26505740 (+)
DBA/2J	ENSMUSG00185039979	miRNA gene	Chr5:28359413-28359492 (+)
FVB/NJ	ENSMUSG00205043996	miRNA gene	Chr5:25257077-25257156 (+)
JF1/MsJ	ENSUMUG00000054572	miRNA gene	Chr5:32905623-32905702 (+)
LP/J	ENSMUSG00230048501	miRNA gene	Chr5:32975821-32975900 (+)
NOD/ShiLtJ	ENSMUSG00190016862	miRNA gene	Chr5:25556484-25556563 (+)
NZO/HlLtJ	ENSMUSG00225021396	miRNA gene	Chr5:38183954-38184033 (+)
PWK/PhJ	ENSLUMG00010049389	miRNA gene	Chr5:25656117-25656196 (+)
SPRET/EiJ	ENSMSPG00010044028	miRNA gene	Chr5:26776656-26776735 (+)
WSB/EiJ	ENSIUOG00005044245	miRNA gene	Chr5:28455754-28455833 (+)

Homology

• Gene Tree
  Mir5625
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Mir5625
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093710 (Evidence)
• NCBI Gene
  100885838

Representative Sequences			Length	Strain/Species
genomic	100885838	NCBI Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	NR_049199	RefSeq | MGI Sequence Detail	80	ZRU/MplStud

Other Database
Links

miRBase

MI0019194

References

• Summaries
  All 26

  Diseases 1

  Phenotypes 21
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Mir5625:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45604	Chr5:30805279-30805342 (+)	31 bp