Gm23661 Gene Detail

Summary

• Symbol
  Gm23661
• Name
  predicted gene, 23661

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5453438
  NCBI Gene: 115490305
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:70076438-70076524 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453438	snRNA gene	Chr5:70076438-70076529 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037992	snRNA gene	Chr5:69773187-69773274 (+)
A/J	MGP_AJ_G0037981	snRNA gene	Chr5:67141897-67141983 (+)
AKR/J	MGP_AKRJ_G0037920	snRNA gene	Chr5:69298878-69298964 (+)
BALB/cJ	MGP_BALBcJ_G0037965	snRNA gene	Chr5:67823487-67823574 (+)
C3H/HeJ	MGP_C3HHeJ_G0037638	snRNA gene	Chr5:69632731-69632817 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038496	snRNA gene	Chr5:72665903-72665989 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035362	snRNA gene	Chr5:63058279-63058366 (+)
CAST/EiJ	MGP_CASTEiJ_G0036797	snRNA gene	Chr5:68772762-68772849 (+)
CBA/J	MGP_CBAJ_G0037611	snRNA gene	Chr5:74987368-74987454 (+)
DBA/2J	MGP_DBA2J_G0037795	snRNA gene	Chr5:67174729-67174815 (+)
FVB/NJ	MGP_FVBNJ_G0037742	snRNA gene	Chr5:66417434-66417520 (+)
LP/J	MGP_LPJ_G0037843	snRNA gene	Chr5:70236791-70236878 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0038608	snRNA gene	Chr5:68920909-68920996 (+)
PWK/PhJ	MGP_PWKPhJ_G0036486	snRNA gene	Chr5:66197173-66197260 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036259	snRNA gene	Chr5:68297347-68297434 (+)
WSB/EiJ	MGP_WSBEiJ_G0037011	snRNA gene	Chr5:69161196-69161283 (+)

Homology

• Gene Tree
  Gm23661
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm23661
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084579 (Evidence)
• NCBI Gene
  115490305

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084579	Ensembl Gene Model | MGI Sequence Detail	87	C57BL/6J
transcript	ENSMUST00000122630	Ensembl | MGI Sequence Detail	87	Not Applicable

References

• Summaries
  All 16

  Phenotypes 13
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm23661:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46599	Chr5:70076436-70076442 (+)	1 bp