Snord60 MGI Mouse Gene Detail - MGI:5453296 - small nucleolar RNA, C/D box 60

Sequence Map

Chr17:24747450-24747527 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453296	snoRNA gene	Chr17:24747450-24747527 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038886	snoRNA gene	Chr17:23519947-23520024 (+)
A/J	MGP_AJ_G0038882	snoRNA gene	Chr17:22885567-22885644 (+)
AKR/J	MGP_AKRJ_G0038816	snoRNA gene	Chr17:22962184-22962261 (+)
BALB/cJ	MGP_BALBcJ_G0038864	snoRNA gene	Chr17:23071877-23071954 (+)
C3H/HeJ	MGP_C3HHeJ_G0038528	snoRNA gene	Chr17:23319528-23319605 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039413	snoRNA gene	Chr17:24571071-24571148 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036148	snoRNA gene	Chr17:20350625-20350702 (+)
CAST/EiJ	MGP_CASTEiJ_G0037669	snoRNA gene	Chr17:23159008-23159085 (+)
CBA/J	MGP_CBAJ_G0038500	snoRNA gene	Chr17:25408274-25408351 (+)
DBA/2J	MGP_DBA2J_G0038688	snoRNA gene	Chr17:22474399-22474476 (+)
FVB/NJ	MGP_FVBNJ_G0038641	snoRNA gene	Chr17:22193359-22193436 (+)
LP/J	MGP_LPJ_G0038728	snoRNA gene	Chr17:23831160-23831237 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038640	snoRNA gene	Chr17:25122801-25122878 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039515	snoRNA gene	Chr17:23239393-23239470 (+)
PWK/PhJ	MGP_PWKPhJ_G0037354	snoRNA gene	Chr17:21223575-21223652 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037110	snoRNA gene	Chr17:21275451-21275528 (+)
WSB/EiJ	MGP_WSBEiJ_G0037897	snoRNA gene	Chr17:23307260-23307337 (+)

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Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	115488833	NCBI Gene Model \| MGI Sequence Detail	78	C57BL/6J	± kb
	transcript	XR_004939753	RefSeq \| MGI Sequence Detail	78	C57BL/6J

Summaries

All 5

Gene Ontology 1
Earliest

J:207204 Brandis KA, et al., Box C/D small nucleolar RNA (snoRNA) U60 regulates intracellular cholesterol trafficking. J Biol Chem. 2013 Dec 13;288(50):35703-13

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/23/2024 MGI 6.23