Gm23000 Gene Detail

Summary

• Symbol
  Gm23000
• Name
  predicted gene, 23000

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5452777
  NCBI Gene: 115489256
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:65772021-65772159 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452777	snRNA gene	ChrX:65772021-65772159 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038319	snRNA gene	ChrX:62306048-62306186 (+)
A/J	MGP_AJ_G0038314	snRNA gene	ChrX:62469100-62469238 (+)
AKR/J	MGP_AKRJ_G0038251	snRNA gene	ChrX:64198215-64198353 (+)
BALB/cJ	MGP_BALBcJ_G0038298	snRNA gene	ChrX:61776678-61776816 (+)
C3H/HeJ	MGP_C3HHeJ_G0037964	snRNA gene	ChrX:62796651-62796789 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038834	snRNA gene	ChrX:64144690-64144828 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035631	snRNA gene	ChrX:61764090-61764230 (+)
CAST/EiJ	MGP_CASTEiJ_G0037110	snRNA gene	ChrX:48356950-48357088 (+)
CBA/J	MGP_CBAJ_G0037934	snRNA gene	ChrX:65956537-65956675 (+)
DBA/2J	MGP_DBA2J_G0038125	snRNA gene	ChrX:62015396-62015534 (+)
FVB/NJ	MGP_FVBNJ_G0038072	snRNA gene	ChrX:61524364-61524502 (+)
LP/J	MGP_LPJ_G0038164	snRNA gene	ChrX:63088479-63088656 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0038941	snRNA gene	ChrX:62175304-62175442 (+)
PWK/PhJ	MGP_PWKPhJ_G0036801	snRNA gene	ChrX:46577792-46577930 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0037338	snRNA gene	ChrX:61601864-61601978 (+)

Homology

• Gene Tree
  Gm23000
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000087708 (Evidence)
• NCBI Gene
  115489256

Representative Sequences			Length	Strain/Species
genomic	115489256	NCBI Gene Model | MGI Sequence Detail	139	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;