Gm22956 Gene Detail

Summary

• Symbol
  Gm22956
• Name
  predicted gene, 22956

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5452733
  NCBI Gene: 115490322
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:138217999-138218078 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452733	snRNA gene	Chr5:138217999-138218127 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038040	snRNA gene	Chr5:143016281-143016358 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0037965	snRNA gene	Chr5:141309292-141309371 (+)
BALB/cJ	MGP_BALBcJ_G0038012	snRNA gene	Chr5:138281191-138281268 (+)
C3H/HeJ	MGP_C3HHeJ_G0037685	snRNA gene	Chr5:142006048-142006125 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038542	snRNA gene	Chr5:148365413-148365492 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0036841	snRNA gene	Chr5:141283627-141283704 (+)
CBA/J	MGP_CBAJ_G0037658	snRNA gene	Chr5:154259994-154260071 (+)
DBA/2J	MGP_DBA2J_G0037842	snRNA gene	Chr5:136798699-136798776 (+)
FVB/NJ	MGP_FVBNJ_G0037790	snRNA gene	Chr5:135898177-135898255 (+)
LP/J	MGP_LPJ_G0037888	snRNA gene	Chr5:143555666-143555743 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037797	snRNA gene	Chr5:157142839-157142918 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038657	snRNA gene	Chr5:141120933-141121012 (+)
PWK/PhJ	MGP_PWKPhJ_G0036532	snRNA gene	Chr5:135805757-135805836 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036303	snRNA gene	Chr5:138706785-138706863 (+)
WSB/EiJ	MGP_WSBEiJ_G0037054	snRNA gene	Chr5:141812271-141812349 (+)

Homology

• Gene Tree
  Gm22956
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000084469 (Evidence)
• NCBI Gene
  115490322

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084469	Ensembl Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	ENSMUST00000122520	Ensembl | MGI Sequence Detail	80	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm22956:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49427	Chr5:138217995-138218002 (+)	0 bp