Gm22249 Gene Detail

Summary

• Symbol
  Gm22249
• Name
  predicted gene, 22249

• Feature Type
  snRNA gene
• IDs
  MGI:5452026
  NCBI Gene: 115490319
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:38703801-38703936 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452026	snRNA gene	Chr5:38703801-38703936 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037982	snRNA gene	Chr5:36963048-36963183 (+)
A/J	MGP_AJ_G0037969	snRNA gene	Chr5:35718268-35718403 (+)
AKR/J	MGP_AKRJ_G0037908	snRNA gene	Chr5:37058491-37058626 (+)
BALB/cJ	MGP_BALBcJ_G0037954	snRNA gene	Chr5:36209258-36209393 (+)
C3H/HeJ	MGP_C3HHeJ_G0037628	snRNA gene	Chr5:37052812-37052947 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038484	snRNA gene	Chr5:38908847-38908982 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0036788	snRNA gene	Chr5:36221766-36221901 (+)
CBA/J	MGP_CBAJ_G0037601	snRNA gene	Chr5:39829663-39829798 (+)
DBA/2J	MGP_DBA2J_G0037785	snRNA gene	Chr5:35850586-35850721 (+)
FVB/NJ	MGP_FVBNJ_G0037731	snRNA gene	Chr5:35337266-35337401 (+)
LP/J	MGP_LPJ_G0037831	snRNA gene	Chr5:37420305-37420440 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037742	snRNA gene	Chr5:40546353-40546488 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038596	snRNA gene	Chr5:36550902-36551037 (+)
PWK/PhJ	MGP_PWKPhJ_G0036478	snRNA gene	Chr5:35010257-35010390 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036252	snRNA gene	Chr5:35993349-35993484 (+)
WSB/EiJ	MGP_WSBEiJ_G0037002	snRNA gene	Chr5:36640166-36640301 (+)

Homology

• Gene Tree
  Gm22249
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  14 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (ENU)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm22249
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000064419 (Evidence)
• NCBI Gene
  115490319

Representative Sequences			Length	Strain/Species
genomic	115490319	NCBI Gene Model | MGI Sequence Detail	136	C57BL/6J
transcript	XR_004942874	RefSeq | MGI Sequence Detail	136	C57BL/6J

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 14
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm22249:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46062	Chr5:38703797-38703803 (+)	-1 bp