Gm21985 Gene Detail

Summary

• Symbol
  Gm21985
• Name
  predicted gene 21985

• Feature Type
  protein coding gene
• IDs
  MGI:5439454
  NCBI Gene: 108168782
• Alliance
  genome feature page
• Transcription Start Sites
  22 TSS

Location &
Maps

• Sequence Map
  Chr2:112096659-112236664 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  2627 from dbSNP Build 142
• Strain Annotations
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439454	protein coding gene	Chr2:112096659-112236664 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0024089	protein coding gene	Chr2:105243821-105388614 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm21985
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  7
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm21985
• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7
• UniProt
  2

• Ensembl
  ENSMUSG00000096764 (Evidence)
• NCBI Gene
  108168782

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096764	Ensembl Gene Model | MGI Sequence Detail	140006	C57BL/6J
transcript	ENSMUST00000141047	Ensembl | MGI Sequence Detail	4532	Not Applicable
polypeptide	ENSMUSP00000124314	Ensembl | MGI Sequence Detail	1106	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR004841 Amino acid permease/SLC12A domain
  IPR000076 K/Cl co-transporter
  IPR018491 SLC12A transporter, C-terminal
  IPR004842 SLC12A transporter family

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm21985:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19351	Chr2:112095894-112095902 (+)	-761 bp
Tssr19352	Chr2:112095903-112095992 (+)	-711 bp
Tssr19353	Chr2:112096053-112096064 (+)	-600 bp
Tssr19354	Chr2:112096079-112096105 (+)	-567 bp
Tssr19355	Chr2:112096128-112096139 (+)	-525 bp
Tssr596	Chr2:112096149-112096152 (+)	-508 bp
Tssr19356	Chr2:112096154-112096203 (+)	-480 bp
Tssr19357	Chr2:112096206-112096270 (+)	-421 bp
Tssr19358	Chr2:112096739-112096749 (+)	85 bp
Tssr19359	Chr2:112096801-112096849 (+)	166 bp
Tssr19360	Chr2:112096861-112096895 (+)	219 bp
Tssr19361	Chr2:112097156-112097207 (+)	523 bp
Tssr19363	Chr2:112111969-112111973 (+)	15,312 bp
Tssr19364	Chr2:112113536-112113540 (+)	16,879 bp
Tssr19365	Chr2:112114906-112114955 (+)	18,272 bp
Tssr19366	Chr2:112115325-112115327 (+)	18,667 bp
Tssr19367	Chr2:112136093-112136099 (+)	39,437 bp
Tssr19368	Chr2:112136327-112136354 (+)	39,682 bp
Tssr19369	Chr2:112192033-112192058 (+)	95,387 bp
Tssr19370	Chr2:112192089-112192097 (+)	95,434 bp
Tssr19373	Chr2:112207328-112207351 (+)	110,681 bp
Tssr19374	Chr2:112207500-112207520 (+)	110,851 bp