Gm21963 Pseudogene Detail

Summary

• Symbol
  Gm21963
• Name
  predicted gene, 21963

• Feature Type
  pseudogene
• IDs
  MGI:5439432
  NCBI Gene: 118568052
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:62926596-62926848 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439432	pseudogene	Chr13:62926596-62926925 (+)
129S1/SvImJ	ENSMUSG00200017483	pseudogene	Chr13:59048381-59048710 (+)
A/J	ENSMUSG00195045812	pseudogene	Chr13:59203257-59203586 (+)
AKR/J	ENSMUSG00220045253	pseudogene	Chr13:58276540-58276869 (+)
BALB/cJ	ENSMUSG00180018216	pseudogene	Chr13:59521430-59521759 (+)
C3H/HeJ	ENSMUSG00175046902	pseudogene	Chr13:59334469-59334798 (+)
C57BL/6NJ	ENSMUSG00215041520	pseudogene	Chr13:59336889-59337218 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041590	pseudogene	Chr13:59727711-59728040 (+)
CBA/J	ENSMUSG00210043492	pseudogene	Chr13:59533951-59534280 (+)
DBA/2J	ENSMUSG00185009840	pseudogene	Chr13:60382565-60382894 (+)
FVB/NJ	ENSMUSG00205046903	pseudogene	Chr13:58508575-58508904 (+)
JF1/MsJ	ENSUMUG00000040674	pseudogene	Chr13:60011775-60012104 (+)
LP/J	ENSMUSG00230036420	pseudogene	Chr13:69724954-69725283 (+)
NOD/ShiLtJ	ENSMUSG00190040279	pseudogene	Chr13:59283457-59283786 (+)
NZO/HlLtJ	ENSMUSG00225047875	pseudogene	Chr13:63433829-63434158 (+)
PWK/PhJ	ENSLUMG00010024542	pseudogene	Chr13:58845331-58845660 (+)
SPRET/EiJ	ENSMSPG00010044619	pseudogene	Chr13:59010570-59010896 (+)
WSB/EiJ	ENSIUOG00005025780	pseudogene	Chr13:58013958-58014287 (+)

Homology

• Gene Tree
  Gm21963
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm21963
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000095895 (Evidence)
• NCBI Gene
  118568052

Representative Sequences			Length	Strain/Species
genomic	118568052	NCBI Gene Model | MGI Sequence Detail	253	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm21963:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120162	Chr13:62926410-62926418 (+)	-182 bp