Gm21956 Pseudogene Detail

Summary

• Symbol
  Gm21956
• Name
  predicted gene, 21956

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5439425
  NCBI Gene: 108168878
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:88283330-88284382 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439425	pseudogene	Chr3:88283128-88284962 (+)
129S1/SvImJ	ENSMUSG00200039768	pseudogene	Chr3:85138189-85139241 (+)
A/J	ENSMUSG00195053603	pseudogene	Chr3:85159868-85160920 (+)
AKR/J	ENSMUSG00220051560	pseudogene	Chr3:85114934-85115986 (+)
BALB/cJ	ENSMUSG00180049612	pseudogene	Chr3:85284567-85285619 (+)
C3H/HeJ	ENSMUSG00175048890	pseudogene	Chr3:85092911-85093963 (+)
C57BL/6NJ	ENSMUSG00215049894	pseudogene	Chr3:85525925-85526977 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037307	pseudogene	Chr3:81143682-81144717 (+)
CAST/EiJ	ENSTCUG00005049467	pseudogene	Chr3:84615235-84616287 (+)
CBA/J	ENSMUSG00210048522	pseudogene	Chr3:85230589-85231641 (+)
DBA/2J	ENSMUSG00185052763	pseudogene	Chr3:85373183-85374235 (+)
FVB/NJ	ENSMUSG00205049994	pseudogene	Chr3:84154727-84155779 (+)
JF1/MsJ	ENSUMUG00000050844	pseudogene	Chr3:84899122-84900174 (+)
LP/J	ENSMUSG00230036374	pseudogene	Chr3:87359583-87360635 (+)
NOD/ShiLtJ	ENSMUSG00190051018	pseudogene	Chr3:85606946-85607998 (+)
NZO/HlLtJ	ENSMUSG00225007713	pseudogene	Chr3:90122137-90123189 (+)
PWK/PhJ	ENSLUMG00010052865	pseudogene	Chr3:84993394-84993725 (+)
SPRET/EiJ	ENSMSPG00010050553	pseudogene	Chr3:85837460-85838507 (+)
WSB/EiJ	ENSIUOG00005051162	pseudogene	Chr3:85621622-85622674 (+)
WSB/EiJ	ENSIUOG00005050586	pseudogene	Chr3:85606727-85607779 (+)
WSB/EiJ	ENSIUOG00005051165	pseudogene	Chr3:85636483-85637535 (+)

Homology

• Gene Tree
  Gm21956
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm21956
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000096792 (Evidence)
• NCBI Gene
  108168878

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096792	Ensembl Gene Model | MGI Sequence Detail	1053	C57BL/6J
transcript	ENSMUST00000179946	Ensembl | MGI Sequence Detail	522	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426