4933400C23Rik Gene Detail

Summary

• Symbol
  4933400C23Rik
• Name
  RIKEN cDNA 4933400C23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439420
  NCBI Gene: 331003
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:92600769-92677764 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2829 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439420	lncRNA gene	Chr9:92599509-92677764 (+)
129S1/SvImJ	ENSMUSG00200005942	lncRNA gene	Chr9:89724369-89802619 (+)
A/J	ENSMUSG00195007597	lncRNA gene	Chr9:88973704-89051969 (+)
AKR/J	ENSMUSG00220020475	lncRNA gene	Chr9:89359569-89437852 (+)
BALB/cJ	ENSMUSG00180007332	lncRNA gene	Chr9:89294166-89372412 (+)
C3H/HeJ	ENSMUSG00175004724	lncRNA gene	Chr9:89605531-89683785 (+)
C57BL/6NJ	ENSMUSG00215010588	lncRNA gene	Chr9:89611784-89690053 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004361	lncRNA gene	Chr9:89512891-89592078 (+)
CBA/J	ENSMUSG00210005911	lncRNA gene	Chr9:89487769-89566017 (+)
DBA/2J	ENSMUSG00185002194	lncRNA gene	Chr9:89671853-89742372 (+)
FVB/NJ	ENSMUSG00205005099	lncRNA gene	Chr9:89789670-89861349 (+)
JF1/MsJ	ENSUMUG00000029512	lncRNA gene	Chr9:89376660-89447184 (+)
LP/J	ENSMUSG00230009622	lncRNA gene	Chr9:89830344-89908596 (+)
NOD/ShiLtJ	ENSMUSG00190011334	lncRNA gene	Chr9:89274140-89352396 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010003203	lncRNA gene	Chr9:89357484-89427941 (+)
SPRET/EiJ	ENSMSPG00010003909	lncRNA gene	Chr9:91122960-91204518 (+)
WSB/EiJ	ENSIUOG00005003735	lncRNA gene	Chr9:88710920-88791736 (+)

Homology

• Gene Tree
  4933400C23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 4933400C23Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000101734 (Evidence)
• NCBI Gene
  331003

Representative Sequences			Length	Strain/Species
genomic	331003	NCBI Gene Model | MGI Sequence Detail	76996	C57BL/6J
transcript	NR_040770	RefSeq | MGI Sequence Detail	1708	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14