5430403N17Rik Gene Detail

Summary

• Symbol
  5430403N17Rik
• Name
  RIKEN cDNA 5430403N17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439418
  NCBI Gene: 330737
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:36331239-36350111 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  884 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439418	lncRNA gene	Chr8:36331239-36350192 (-)
129S1/SvImJ	ENSMUSG00200007987	lncRNA gene	Chr8:31425342-31444332 (-)
A/J	ENSMUSG00195005990	lncRNA gene	Chr8:31927494-31946484 (-)
AKR/J	ENSMUSG00220006059	lncRNA gene	Chr8:31690164-31709152 (-)
BALB/cJ	ENSMUSG00180003379	lncRNA gene	Chr8:31470837-31489825 (-)
C3H/HeJ	ENSMUSG00175014846	lncRNA gene	Chr8:31633341-31652325 (-)
C57BL/6NJ	ENSMUSG00215008550	lncRNA gene	Chr8:31400488-31419361 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005584	lncRNA gene	Chr8:31589868-31608985 (-)
CBA/J	ENSMUSG00210012786	lncRNA gene	Chr8:31456333-31475317 (-)
DBA/2J	ENSMUSG00185002351	lncRNA gene	Chr8:37382594-37401576 (-)
FVB/NJ	ENSMUSG00205002384	lncRNA gene	Chr8:30668948-30687935 (-)
JF1/MsJ	ENSUMUG00000010282	lncRNA gene	Chr8:39076504-39095422 (-)
LP/J	ENSMUSG00230009762	lncRNA gene	Chr8:41032700-41051681 (-)
NOD/ShiLtJ	ENSMUSG00190015664	lncRNA gene	Chr8:31504216-31523201 (-)
NZO/HlLtJ	ENSMUSG00225015016	lncRNA gene	Chr8:44629182-44648471 (-)
PWK/PhJ	ENSLUMG00010013165	lncRNA gene	Chr8:31300581-31319516 (-)
SPRET/EiJ	ENSMSPG00010004468	lncRNA gene	Chr8:32030369-32049640 (-)
WSB/EiJ	ENSIUOG00005006003	lncRNA gene	Chr8:32266174-32285465 (-)

Homology

• Gene Tree
  5430403N17Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000109761 (Evidence)
• NCBI Gene
  330737

Representative Sequences			Length	Strain/Species
genomic	330737	NCBI Gene Model | MGI Sequence Detail	18873	C57BL/6J
transcript	NR_046181	RefSeq | MGI Sequence Detail	2553	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;