B930018H19Rik Gene Detail

Summary

• Symbol
  B930018H19Rik
• Name
  RIKEN cDNA B930018H19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439417
  NCBI Gene: 330734
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:35056574-35107470 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1939 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439417	lncRNA gene	Chr8:35056574-35107683 (-)
129S1/SvImJ	ENSMUSG00200007962	lncRNA gene	Chr8:30133259-30184051 (-)
A/J	ENSMUSG00195006305	lncRNA gene	Chr8:30639684-30688912 (-)
AKR/J	ENSMUSG00220005957	lncRNA gene	Chr8:30402519-30451779 (-)
BALB/cJ	ENSMUSG00180003194	lncRNA gene	Chr8:30183059-30232286 (-)
C3H/HeJ	ENSMUSG00175014960	lncRNA gene	Chr8:30345765-30395000 (-)
C57BL/6NJ	ENSMUSG00215008225	lncRNA gene	Chr8:30125245-30176152 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005950	lncRNA gene	Chr8:30300437-30351284 (-)
CBA/J	ENSMUSG00210012835	lncRNA gene	Chr8:30168717-30217952 (-)
DBA/2J	ENSMUSG00185002296	lncRNA gene	Chr8:36095028-36144272 (-)
FVB/NJ	ENSMUSG00205004384	lncRNA gene	Chr8:29391196-29442095 (-)
JF1/MsJ	ENSUMUG00000009199	lncRNA gene	Chr8:37800880-37851782 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190015814	lncRNA gene	Chr8:30215205-30264394 (-)
NZO/HlLtJ	ENSMUSG00225014893	lncRNA gene	Chr8:43337935-43388832 (-)
PWK/PhJ	ENSLUMG00010027213	lncRNA gene	Chr8:30033181-30084732 (-)
SPRET/EiJ	ENSMSPG00010004494	lncRNA gene	Chr8:30718793-30770282 (-)
WSB/EiJ	ENSIUOG00005005611	lncRNA gene	Chr8:30966621-31017188 (-)

Homology

• Gene Tree
  B930018H19Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000109819 (Evidence)
• NCBI Gene
  330734

Representative Sequences			Length	Strain/Species
genomic	330734	NCBI Gene Model | MGI Sequence Detail	50897	C57BL/6J
transcript	NR_040706	RefSeq | MGI Sequence Detail	2121	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for B930018H19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80911	Chr8:35090124-35090130 (-)	17,343 bp