C230079O03Rik Gene Detail

Summary

• Symbol
  C230079O03Rik
• Name
  RIKEN cDNA C230079O03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439416
  NCBI Gene: 330664
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:135933945-135951144 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  622 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439416	lncRNA gene	Chr7:135933945-135951144 (-)
129S1/SvImJ	ENSMUSG00200047556	lncRNA gene	Chr7:122488053-122505252 (-)
A/J	ENSMUSG00195042234	lncRNA gene	Chr7:126958846-126976046 (-)
AKR/J	ENSMUSG00220016891	lncRNA gene	Chr7:120421545-120438746 (-)
BALB/cJ	ENSMUSG00180040852	lncRNA gene	Chr7:123662376-123679576 (-)
C3H/HeJ	ENSMUSG00175042830	lncRNA gene	Chr7:124391063-124408264 (-)
C57BL/6NJ	ENSMUSG00215047457	lncRNA gene	Chr7:123653621-123670820 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051480	lncRNA gene	Chr7:126963539-126980839 (-)
CBA/J	ENSMUSG00210032278	lncRNA gene	Chr7:124156855-124174054 (-)
DBA/2J	ENSMUSG00185024454	lncRNA gene	Chr7:128449919-128467118 (-)
FVB/NJ	ENSMUSG00205046120	lncRNA gene	Chr7:124118453-124135652 (-)
JF1/MsJ	ENSUMUG00000051707	lncRNA gene	Chr7:133511986-133529231 (-)
LP/J	ENSMUSG00230043805	lncRNA gene	Chr7:134591714-134608913 (-)
NOD/ShiLtJ	ENSMUSG00190030071	lncRNA gene	Chr7:124267503-124284702 (-)
NZO/HlLtJ	ENSMUSG00225052671	lncRNA gene	Chr7:132822457-132839656 (-)
PWK/PhJ	ENSLUMG00010049326	lncRNA gene	Chr7:122674808-122692047 (-)
SPRET/EiJ	ENSMSPG00010044969	lncRNA gene	Chr7:123978088-123995332 (-)
WSB/EiJ	ENSIUOG00005037569	lncRNA gene	Chr7:124972396-124989589 (-)

Homology

• Gene Tree
  C230079O03Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000109633 (Evidence)
• NCBI Gene
  330664

Representative Sequences			Length	Strain/Species
genomic	330664	NCBI Gene Model | MGI Sequence Detail	17200	C57BL/6J
transcript	NR_040459	RefSeq | MGI Sequence Detail	1385	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;