9330117O12Rik Gene Detail

Summary

• Symbol
  9330117O12Rik
• Name
  RIKEN cDNA 9330117O12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439411
  NCBI Gene: 328957
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:54744816-54772942 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  873 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439411	lncRNA gene	Chr18:54744781-54772944 (+)
129S1/SvImJ	ENSMUSG00200034035	lncRNA gene	Chr18:51781751-51809838 (+)
A/J	ENSMUSG00195005405	lncRNA gene	Chr18:51929605-51957689 (+)
AKR/J	ENSMUSG00220016345	lncRNA gene	Chr18:51916920-51945021 (+)
BALB/cJ	ENSMUSG00180012583	lncRNA gene	Chr18:52497535-52525643 (+)
C3H/HeJ	ENSMUSG00175036975	lncRNA gene	Chr18:52111892-52140003 (+)
C57BL/6NJ	ENSMUSG00215039604	lncRNA gene	Chr18:51472947-51501078 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027544	lncRNA gene	Chr18:51320528-51352357 (+)
CBA/J	ENSMUSG00210032815	lncRNA gene	Chr18:52044697-52072821 (+)
DBA/2J	ENSMUSG00185016016	lncRNA gene	Chr18:51964753-51992873 (+)
FVB/NJ	ENSMUSG00205018135	lncRNA gene	Chr18:51406519-51434642 (+)
JF1/MsJ	ENSUMUG00000035322	lncRNA gene	Chr18:51876408-51908194 (+)
LP/J	ENSMUSG00230011567	lncRNA gene	Chr18:53961019-53989104 (+)
NOD/ShiLtJ	ENSMUSG00190032626	lncRNA gene	Chr18:51674624-51702732 (+)
NZO/HlLtJ	ENSMUSG00225035389	lncRNA gene	Chr18:53862992-53891111 (+)
PWK/PhJ	ENSLUMG00010008642	lncRNA gene	Chr18:52015593-52044301 (+)
SPRET/EiJ	ENSMSPG00010018928	lncRNA gene	Chr18:52390040-52419719 (+)
WSB/EiJ	ENSIUOG00005009725	lncRNA gene	Chr18:51596902-51625013 (+)

Homology

• Human Ortholog
  LINC01170, long independently transcribed non-coding RNA 1170

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  LINC01170, long independently transcribed non-coding RNA 1170
  
• Links
  HGNC:49542

  NCBI Gene ID: 103724389

  
  
• Chr Location
  5q23.2; chr5:124059664-124438655 (-)  GRCh38

---

• MGI Vertebrate Homology
  9330117O12Rik stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: LINC01170
• Gene Tree
  9330117O12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving 9330117O12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000118154 (Evidence)
• NCBI Gene
  328957

Representative Sequences			Length	Strain/Species
genomic	328957	NCBI Gene Model | MGI Sequence Detail	28127	C57BL/6J
transcript	NR_045400	RefSeq | MGI Sequence Detail	1840	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for 9330117O12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151113	Chr18:54744860-54744871 (+)	50 bp