C330011F03Rik Gene Detail

Summary

• Symbol
  C330011F03Rik
• Name
  RIKEN cDNA C330011F03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439410
  NCBI Gene: 328837
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:51732237-51755297 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  879 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439410	lncRNA gene	Chr17:51732233-51755349 (-)
129S1/SvImJ	ENSMUSG00200028971	lncRNA gene	Chr17:46965635-46976251 (-)
A/J	ENSMUSG00195022900	lncRNA gene	Chr17:48434138-48444752 (-)
AKR/J	ENSMUSG00220037984	lncRNA gene	Chr17:47434160-47444777 (-)
BALB/cJ	ENSMUSG00180027321	lncRNA gene	Chr17:48190410-48201021 (-)
C3H/HeJ	ENSMUSG00175016510	lncRNA gene	Chr17:47497721-47508333 (-)
C57BL/6NJ	ENSMUSG00215037475	lncRNA gene	Chr17:47063023-47073654 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026630	lncRNA gene	Chr17:48267794-48278386 (-)
CBA/J	ENSMUSG00210039921	lncRNA gene	Chr17:47247278-47257886 (-)
DBA/2J	ENSMUSG00185030306	lncRNA gene	Chr17:50146410-50157021 (-)
FVB/NJ	ENSMUSG00205053039	lncRNA gene	Chr17:47732566-47743167 (-)
JF1/MsJ	ENSUMUG00000040576	lncRNA gene	Chr17:49881217-49891841 (-)
LP/J	ENSMUSG00230042053	lncRNA gene	Chr17:51077057-51087676 (-)
NOD/ShiLtJ	ENSMUSG00190018736	lncRNA gene	Chr17:47223234-47233850 (-)
NZO/HlLtJ	ENSMUSG00225044047	lncRNA gene	Chr17:53301640-53312280 (-)
PWK/PhJ	ENSLUMG00010036935	lncRNA gene	Chr17:47085374-47096073 (-)
SPRET/EiJ	ENSMSPG00010040238	lncRNA gene	Chr17:47299413-47310120 (-)
WSB/EiJ	ENSIUOG00005027945	lncRNA gene	Chr17:48117761-48128368 (-)

Homology

• Gene Tree
  C330011F03Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000117204 (Evidence)
• NCBI Gene
  328837

Representative Sequences			Length	Strain/Species
genomic	328837	NCBI Gene Model | MGI Sequence Detail	23061	C57BL/6J
transcript	NR_046166	RefSeq | MGI Sequence Detail	2350	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;