A530065N20Rik Gene Detail

Summary

• Symbol
  A530065N20Rik
• Name
  RIKEN cDNA A530065N20Rik gene

• Feature Type
  lncRNA gene
• IDs
  MGI:5439407
  NCBI Gene: 328263
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:60177525-60264483 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3044 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439407	lncRNA gene	Chr13:60177292-60311725 (+)
129S1/SvImJ	ENSMUSG00200017416	lncRNA gene	Chr13:57081589-57168552 (+)
A/J	ENSMUSG00195046765	lncRNA gene	Chr13:56547565-56642878 (+)
AKR/J	ENSMUSG00220044194	lncRNA gene	Chr13:56079650-56166621 (+)
BALB/cJ	ENSMUSG00180016870	lncRNA gene	Chr13:56787318-56880144 (+)
C3H/HeJ	ENSMUSG00175045149	lncRNA gene	Chr13:56577178-56664166 (+)
C57BL/6NJ	ENSMUSG00215040656	lncRNA gene	Chr13:56584809-56671787 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042482	lncRNA gene	Chr13:56967783-57053720 (+)
CBA/J	ENSMUSG00210041133	lncRNA gene	Chr13:56782050-56869007 (+)
DBA/2J	ENSMUSG00185018868	lncRNA gene	Chr13:57625104-57712077 (+)
FVB/NJ	ENSMUSG00205042344	lncRNA gene	Chr13:56393613-56481177 (+)
JF1/MsJ	ENSUMUG00000041957	lncRNA gene	Chr13:56989118-57077896 (+)
LP/J	ENSMUSG00230035014	lncRNA gene	Chr13:66990985-67078992 (+)
NOD/ShiLtJ	ENSMUSG00190032814	lncRNA gene	Chr13:56630459-56725735 (+)
NZO/HlLtJ	ENSMUSG00225035034	lncRNA gene	Chr13:60681208-60768176 (+)
PWK/PhJ	ENSLUMG00010024054	lncRNA gene	Chr13:55914299-56003914 (+)
SPRET/EiJ	ENSMSPG00010041790	lncRNA gene	Chr13:56315739-56399732 (+)
WSB/EiJ	ENSIUOG00005027546	lncRNA gene	Chr13:56105388-56192902 (+)

Homology

• Gene Tree
  A530065N20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Transgenic
  1
• Genomic Mutations
  2 involving A530065N20Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000114531 (Evidence)
• NCBI Gene
  328263

Representative Sequences			Length	Strain/Species
genomic	328263	NCBI Gene Model | MGI Sequence Detail	86959	C57BL/6J
transcript	NR_046142	RefSeq | MGI Sequence Detail	3732	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:373650 Izadifar M, et al., Microfluidic chip systems for characterizing glucose-responsive insulin-secreting cells equipped with FailSafe kill-switch. Stem Cell Res Ther. 2024 Dec 18;15(1):486

TSS for A530065N20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120109	Chr13:60177436-60177443 (+)	-85 bp
Tssr120110	Chr13:60177487-60177507 (+)	-28 bp
Tssr120111	Chr13:60177518-60177523 (+)	-4 bp