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Cfap99 Gene Detail
Summary
  • Symbol
    Cfap99
  • Name
    cilia and flagella associated protein 99
  • Synonyms
    Gm21446
Location &
Maps
more
  • Sequence Map
    Chr5:34445944-34484671 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1032 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5434801
 protein coding gene Chr5:34441107-34486205 (+)
129S1/SvImJ ENSMUSG00200011656
 protein coding gene Chr5:29914994-29953728 (+)
A/J ENSMUSG00195048951
 protein coding gene Chr5:29386623-29425360 (+)
AKR/J ENSMUSG00220007400
 protein coding gene Chr5:29407012-29445751 (+)
BALB/cJ ENSMUSG00180035109
 protein coding gene Chr5:29189528-29228265 (+)
C3H/HeJ ENSMUSG00175019310
 protein coding gene Chr5:31169119-31207854 (+)
C57BL/6NJ ENSMUSG00215040513
 protein coding gene Chr5:29912220-29950946 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005023237
 protein coding gene Chr5:29379718-29418224 (+)
CBA/J ENSMUSG00210038779
 protein coding gene Chr5:30136813-30175554 (+)
DBA/2J ENSMUSG00185016381
 protein coding gene Chr5:32007176-32045663 (+)
FVB/NJ ENSMUSG00205024054
 protein coding gene Chr5:28886535-28925025 (+)
JF1/MsJ ENSUMUG00000021903
 protein coding gene Chr5:36604370-36642536 (+)
LP/J ENSMUSG00230042715
 protein coding gene Chr5:36618676-36657403 (+)
NOD/ShiLtJ ENSMUSG00190014400
 protein coding gene Chr5:29168639-29207127 (+)
NZO/HlLtJ ENSMUSG00225015387
 protein coding gene Chr5:41824918-41863645 (+)
PWK/PhJ ENSLUMG00010042784
 protein coding gene Chr5:29298031-29336656 (+)
SPRET/EiJ ENSMSPG00010034591
 protein coding gene Chr5:30489229-30526683 (+)
WSB/EiJ ENSIUOG00005018180
 protein coding gene Chr5:32095120-32133609 (+)



Homology
more
  • Human Ortholog
    CFAP99, cilia and flagella associated protein 99
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CFAP99, cilia and flagella associated protein 99
  • Links
    NCBI Gene ID: 402160
    UniProt: D6REC4

  • Chr Location
    4p16.3; chr4:2418955-2463003 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
  • All Mutations and Alleles
    11
  • Chemically induced (ENU)
    1
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Gene trapped
    1
  • Radiation induced
    5
  • Spontaneous
    1
  • Genomic Mutations
    9 involving Cfap99
  • Find Mice (IMSR)
    14 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000109572 Ensembl Gene Model | MGI Sequence Detail 38728 C57BL/6J ±  kb
transcript ENSMUST00000207754 Ensembl | MGI Sequence Detail 2123 Not Applicable  
polypeptide ENSMUSP00000146999 Ensembl | MGI Sequence Detail 648 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • PDB
    9IJJ
  • InterPro Domains
    IPR060436 CFAP99, V-shaped coiled-coil domain
    IPR039341 Cilia- and flagella-associated protein 99
  • GlyGen
    A0A140LIX9 1 site
References
more
  • Summaries
    All 30
    Diseases 1
    Phenotypes 24
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory