Alyreffm17 Gene Detail

Summary

• Symbol
  Alyreffm17
• Name
  Aly/REF export factor family member 17
• Synonyms
  Gm21312

• Feature Type
  protein coding gene
• IDs
  MGI:5434667
  NCBI Gene: 100861901
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:104012885-104015352 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434667	protein coding gene	Chr10:104012885-104015352 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195014292	protein coding gene	Chr10:100933523-100935986 (+)
AKR/J	ENSMUSG00220024789	protein coding gene	Chr10:100480356-100482840 (+)
BALB/cJ	ENSMUSG00180009073	protein coding gene	Chr10:100940617-100943080 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215006456	protein coding gene	Chr10:100498816-100501284 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185018385	protein coding gene	Chr10:100882809-100885272 (+)
FVB/NJ	ENSMUSG00205003176	protein coding gene	Chr10:100345337-100347821 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230012232	protein coding gene	Chr10:102829219-102831687 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225040021	protein coding gene	Chr10:107063676-107066153 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Alyreffm17
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Alyreffm17
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  6
• UniProt
  1
• CCDS
  CCDS78892.1

• Ensembl
  ENSMUSG00000094144 (Evidence)
• NCBI Gene
  100861901

Representative Sequences			Length	Strain/Species
genomic	100861901	NCBI Gene Model | MGI Sequence Detail	2468	C57BL/6J
transcript	NM_001270642	RefSeq | MGI Sequence Detail	1246	C57BL/6
polypeptide	NP_001257571	RefSeq | MGI Sequence Detail	264	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR051229 ALYREF mRNA export adapter
  IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
  IPR035979 RNA-binding domain superfamily
  IPR000504 RNA recognition motif domain

Other
Accession IDs

MGI:7595560

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87