Gm21181 Pseudogene Detail

Summary

• Symbol
  Gm21181
• Name
  predicted gene, 21181

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5434536
  NCBI Gene: 100861744
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:120379216-120379545 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434536	pseudogene	Chr13:120379216-120379579 (-)
129S1/SvImJ	ENSMUSG00200003841	pseudogene	Chr13:114385514-114385843 (-)
A/J	ENSMUSG00195000986	pseudogene	Chr13:115122930-115123259 (-)
AKR/J	ENSMUSG00220012822	pseudogene	Chr13:113532141-113532470 (-)
AKR/J	ENSMUSG00220012853	pseudogene	Chr13:113422688-113423017 (-)
BALB/cJ	ENSMUSG00180010894	pseudogene	Chr13:115535324-115535653 (-)
C3H/HeJ	ENSMUSG00175002351	pseudogene	Chr13:115578471-115578800 (-)
C57BL/6NJ	ENSMUSG00215000884	pseudogene	Chr13:115999205-115999534 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210017374	pseudogene	Chr13:114933976-114934305 (-)
DBA/2J	ENSMUSG00185031362	pseudogene	Chr13:118726455-118726784 (-)
FVB/NJ	ENSMUSG00205001278	pseudogene	Chr13:114592508-114592837 (+)
JF1/MsJ	ENSUMUG00000018373	pseudogene	Chr13:118159344-118159673 (-)
JF1/MsJ	ENSUMUG00000019569	pseudogene	Chr13:118444988-118445317 (+)
LP/J	ENSMUSG00230013232	pseudogene	Chr13:129009345-129009674 (-)
NOD/ShiLtJ	ENSMUSG00190040041	pseudogene	Chr13:25337480-25337809 (-)
NZO/HlLtJ	ENSMUSG00225031291	pseudogene	Chr13:121430266-121430595 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010007094	pseudogene	Chr13:116161874-116162203 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm21181
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000101579 (Evidence)
• NCBI Gene
  100861744

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101579	Ensembl Gene Model | MGI Sequence Detail	330	C57BL/6J
transcript	ENSMUST00000186249	Ensembl | MGI Sequence Detail	330	Not Applicable
polypeptide	XP_036014162	RefSeq | MGI Sequence Detail	104	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;