Gm21178 Pseudogene Detail

Summary

• Symbol
  Gm21178
• Name
  predicted gene, 21178

• Feature Type
  pseudogene
• IDs
  MGI:5434533
  NCBI Gene: 100861741
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:103857518-103858245 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434533	pseudogene	Chr15:103857500-103858913 (+)
129S1/SvImJ	ENSMUSG00200052889	pseudogene	Chr15:101086215-101086942 (+)
A/J	ENSMUSG00195046028	pseudogene	Chr15:100956497-100957224 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180047348	pseudogene	Chr15:100848905-100849632 (+)
C3H/HeJ	ENSMUSG00175047673	pseudogene	Chr15:101167582-101168309 (+)
C57BL/6NJ	ENSMUSG00215052038	pseudogene	Chr15:100899168-100899895 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047961	pseudogene	Chr15:100409077-100409805 (+)
CBA/J	ENSMUSG00210032627	pseudogene	Chr15:100909428-100910155 (+)
DBA/2J	ENSMUSG00185042431	pseudogene	Chr15:101008988-101009715 (+)
FVB/NJ	ENSMUSG00205047958	pseudogene	Chr15:100634206-100634933 (+)
JF1/MsJ	ENSUMUG00000057232	pseudogene	Chr15:100437802-100438530 (+)
LP/J	ENSMUSG00230006959	pseudogene	Chr15:104297098-104297825 (+)
NOD/ShiLtJ	ENSMUSG00190049973	pseudogene	Chr15:100953718-100954445 (+)
NZO/HlLtJ	ENSMUSG00225028289	pseudogene	Chr15:104479393-104480120 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010050810	pseudogene	Chr15:102205509-102205651 (+)
WSB/EiJ	ENSIUOG00005042907	pseudogene	Chr15:101014350-101015077 (+)

Homology

• Gene Tree
  Gm21178
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000115448 (Evidence)
• NCBI Gene
  100861741

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115448	Ensembl Gene Model | MGI Sequence Detail	728	C57BL/6J
transcript	ENSMUST00000227184	Ensembl | MGI Sequence Detail	728	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;