Gm21089 Pseudogene Detail

Summary

• Symbol
  Gm21089
• Name
  predicted gene, 21089

• Feature Type
  pseudogene
• IDs
  MGI:5434444
  NCBI Gene: 100861631
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:6594237-6594561 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434444	pseudogene	Chr9:6594237-6594585 (+)
129S1/SvImJ	ENSMUSG00200023056	pseudogene	Chr9:3482274-3482598 (+)
A/J	ENSMUSG00195019755	pseudogene	Chr9:3356738-3357062 (+)
AKR/J	ENSMUSG00220018943	pseudogene	Chr9:3533052-3533376 (+)
BALB/cJ	ENSMUSG00180011881	pseudogene	Chr9:3494676-3495000 (+)
C3H/HeJ	ENSMUSG00175024254	pseudogene	Chr9:3421876-3422200 (+)
C57BL/6NJ	ENSMUSG00215007386	pseudogene	Chr9:3430466-3430790 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007327	pseudogene	Chr9:3554963-3555287 (+)
CBA/J	ENSMUSG00210011013	pseudogene	Chr9:3445427-3445751 (+)
DBA/2J	ENSMUSG00185005275	pseudogene	Chr9:3562728-3563052 (+)
FVB/NJ	ENSMUSG00205007194	pseudogene	Chr9:3549124-3549448 (+)
JF1/MsJ	ENSUMUG00000009382	pseudogene	Chr9:3627848-3628054 (+)
LP/J	ENSMUSG00230004510	pseudogene	Chr9:4040436-4040760 (+)
NOD/ShiLtJ	ENSMUSG00190022397	pseudogene	Chr9:3466308-3466632 (+)
NZO/HlLtJ	ENSMUSG00225017126	pseudogene	Chr9:3902290-3902614 (+)
PWK/PhJ	ENSLUMG00010006477	pseudogene	Chr9:3594362-3594568 (+)
SPRET/EiJ	ENSMSPG00010005596	pseudogene	Chr9:3661444-3661768 (+)
WSB/EiJ	ENSIUOG00005007852	pseudogene	Chr9:3377219-3377543 (+)

Homology

• Gene Tree
  Gm21089
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111257 (Evidence)
• NCBI Gene
  100861631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111257	Ensembl Gene Model | MGI Sequence Detail	325	C57BL/6J
transcript	ENSMUST00000215843	Ensembl | MGI Sequence Detail	325	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;