Gm21045 Pseudogene Detail

Summary

• Symbol
  Gm21045
• Name
  predicted gene, 21045

• Feature Type
  pseudogene
• IDs
  MGI:5434400
  NCBI Gene: 100534366
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:78045557-78046576 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434400	pseudogene	Chr6:78045551-78046576 (-)
129S1/SvImJ	ENSMUSG00200013004	pseudogene	Chr6:74964142-74965161 (-)
A/J	ENSMUSG00195012557	pseudogene	Chr6:74659244-74660263 (-)
AKR/J	ENSMUSG00220002097	pseudogene	Chr6:73700338-73701357 (-)
BALB/cJ	ENSMUSG00180010725	pseudogene	Chr6:75060980-75061999 (-)
C3H/HeJ	ENSMUSG00175012829	pseudogene	Chr6:102371914-102372933 (+)
C57BL/6NJ	ENSMUSG00215016321	pseudogene	Chr6:75048044-75049063 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011953	pseudogene	Chr6:74637506-74638360 (-)
CAST/EiJ	ENSTCUG00005008515	pseudogene	Chr6:75177847-75178866 (-)
CBA/J	ENSMUSG00210011730	pseudogene	Chr6:74875074-74876093 (-)
DBA/2J	ENSMUSG00185001178	pseudogene	Chr6:75428543-75429562 (-)
FVB/NJ	ENSMUSG00205025477	pseudogene	Chr6:74138694-74139713 (-)
JF1/MsJ	ENSUMUG00000024272	pseudogene	Chr6:74536367-74537386 (-)
LP/J	ENSMUSG00230008214	pseudogene	Chr6:76536395-76537414 (-)
NOD/ShiLtJ	ENSMUSG00190001747	pseudogene	Chr6:74496906-74497925 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010006998	pseudogene	Chr6:73952523-73953542 (-)
SPRET/EiJ	ENSMSPG00010000419	pseudogene	Chr6:75873978-75874991 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm21045
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm21045
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000097964 (Evidence)
• NCBI Gene
  100534366

Representative Sequences			Length	Strain/Species
genomic	100534366	NCBI Gene Model | MGI Sequence Detail	1020	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48