Gm21039 Pseudogene Detail

Summary

• Symbol
  Gm21039
• Name
  predicted gene, 21039

• Feature Type
  pseudogene
• IDs
  MGI:5434394
  NCBI Gene: 100534350
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:88247128-88249540 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434394	pseudogene	Chr12:88246953-88249558 (-)
129S1/SvImJ	ENSMUSG00200050749	pseudogene	Chr12:79998060-80000473 (-)
A/J	ENSMUSG00195036341	pseudogene	Chr12:82346568-82348980 (-)
AKR/J	ENSMUSG00220049344	pseudogene	Chr12:80197642-80200054 (+)
BALB/cJ	ENSMUSG00180016553	pseudogene	Chr12:81818645-81821057 (-)
C3H/HeJ	ENSMUSG00175040613	pseudogene	Chr12:84474637-84477047 (+)
C57BL/6NJ	ENSMUSG00215047752	pseudogene	Chr12:81002573-81004984 (-)
C57BL/6NJ	ENSMUSG00215046541	pseudogene	Chr12:81015929-81018341 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035155	pseudogene	Chr12:80826996-80829409 (-)
CAST/EiJ	ENSTCUG00005035647	pseudogene	Chr12:80877955-80880367 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205044126	pseudogene	Chr12:80564026-80566438 (+)
JF1/MsJ	ENSUMUG00000049530	pseudogene	Chr12:87936085-87938498 (-)
LP/J	ENSMUSG00230047587	pseudogene	Chr12:90314907-90317320 (-)
NOD/ShiLtJ	ENSMUSG00190027104	pseudogene	Chr12:104736976-104739388 (+)
NZO/HlLtJ	ENSMUSG00225052926	pseudogene	Chr12:92111566-92113978 (-)
PWK/PhJ	ENSLUMG00010003796	pseudogene	Chr12:81426462-81428872 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm21039
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm21039
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000113133 (Evidence)
• NCBI Gene
  100534350

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113133	Ensembl Gene Model | MGI Sequence Detail	2413	C57BL/6J
transcript	ENSMUST00000223359	Ensembl | MGI Sequence Detail	2012	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;