Gm21011 Pseudogene Detail

Summary

• Symbol
  Gm21011
• Name
  predicted gene, 21011

• Feature Type
  pseudogene
• IDs
  MGI:5434366
  NCBI Gene: 100534279
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:65054266-65056312 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434366	pseudogene	Chr5:65053593-65061540 (-)
129S1/SvImJ	ENSMUSG00200036695	pseudogene	Chr5:60670654-60672700 (-)
A/J	ENSMUSG00195000448	pseudogene	Chr5:60039416-60041462 (-)
AKR/J	ENSMUSG00220007092	pseudogene	Chr5:60176543-60178589 (-)
BALB/cJ	ENSMUSG00180006654	pseudogene	Chr5:59825256-59827302 (-)
C3H/HeJ	ENSMUSG00175029743	pseudogene	Chr5:61858367-61860413 (-)
C57BL/6NJ	ENSMUSG00215006943	pseudogene	Chr5:60599524-60601570 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000456	pseudogene	Chr5:59752548-59754438 (-)
CBA/J	ENSMUSG00210023582	pseudogene	Chr5:60771328-60773374 (-)
DBA/2J	ENSMUSG00185005914	pseudogene	Chr5:62628824-62630870 (-)
FVB/NJ	ENSMUSG00205011183	pseudogene	Chr5:59577261-59579307 (-)
JF1/MsJ	ENSUMUG00000023286	pseudogene	Chr5:67085293-67087200 (-)
LP/J	ENSMUSG00230009016	pseudogene	Chr5:67283437-67285483 (-)
NOD/ShiLtJ	ENSMUSG00190000437	pseudogene	Chr5:59764560-59766606 (-)
NZO/HlLtJ	ENSMUSG00225010560	pseudogene	Chr5:72409555-72411601 (-)
PWK/PhJ	ENSLUMG00010004439	pseudogene	Chr5:59711918-59713829 (-)
SPRET/EiJ	ENSMSPG00010035550	pseudogene	Chr5:61529640-61531596 (-)
WSB/EiJ	ENSIUOG00005018820	pseudogene	Chr5:62721532-62723470 (-)

Homology

• Gene Tree
  Gm21011
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm21011
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118495 (Evidence)
• NCBI Gene
  100534279

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118495	Ensembl Gene Model | MGI Sequence Detail	2047	C57BL/6J
transcript	ENSMUST00000238830	Ensembl | MGI Sequence Detail	2047	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm21011:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51073	Chr5:65056362-65056375 (-)	-57 bp