Gm21007 Pseudogene Detail

Summary

• Symbol
  Gm21007
• Name
  predicted gene, 21007

• Feature Type
  pseudogene
• IDs
  MGI:5434362
  NCBI Gene: 100526666
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:93683194-93683519 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434362	pseudogene	Chr12:93683193-93683921 (+)
129S1/SvImJ	ENSMUSG00200017817	pseudogene	Chr12:85466606-85466931 (+)
A/J	ENSMUSG00195034956	pseudogene	Chr12:88021690-88022015 (+)
AKR/J	ENSMUSG00220018241	pseudogene	Chr12:85816426-85816751 (+)
BALB/cJ	ENSMUSG00180015947	pseudogene	Chr12:87165188-87165513 (+)
C3H/HeJ	ENSMUSG00175041326	pseudogene	Chr12:89798151-89798476 (+)
C57BL/6NJ	ENSMUSG00215020119	pseudogene	Chr12:86449881-86450206 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006420	pseudogene	Chr12:86204468-86204793 (+)
CBA/J	ENSMUSG00210018899	pseudogene	Chr12:86832294-86832619 (+)
DBA/2J	ENSMUSG00185002924	pseudogene	Chr12:88613924-88614249 (+)
FVB/NJ	ENSMUSG00205000744	pseudogene	Chr12:86009445-86009770 (+)
JF1/MsJ	ENSUMUG00000027203	pseudogene	Chr12:93396413-93396738 (+)
LP/J	ENSMUSG00230004725	pseudogene	Chr12:95741820-95742145 (+)
NOD/ShiLtJ	ENSMUSG00190005301	pseudogene	Chr12:99328055-99328380 (-)
NZO/HlLtJ	ENSMUSG00225033654	pseudogene	Chr12:97451726-97452051 (+)
PWK/PhJ	ENSLUMG00010003657	pseudogene	Chr12:86843438-86843763 (+)
SPRET/EiJ	ENSMSPG00010001196	pseudogene	Chr12:89177121-89177450 (+)
WSB/EiJ	ENSIUOG00005002131	pseudogene	Chr12:85824260-85824585 (+)

Homology

• Gene Tree
  Gm21007
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm21007
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112982 (Evidence)
• NCBI Gene
  100526666

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112982	Ensembl Gene Model | MGI Sequence Detail	326	C57BL/6J
transcript	ENSMUST00000221024	Ensembl | MGI Sequence Detail	326	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:37006 Potten H, et al., Molecular cloning and sequencing of a murine pgk-1 pseudogene family. Gene. 1988 Nov 30;71(2):461-71