Gm20942 Pseudogene Detail

Summary

• Symbol
  Gm20942
• Name
  predicted gene, 20942

• Feature Type
  pseudogene
• IDs
  MGI:5434298
  NCBI Gene: 100048007
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:58375477-58376056 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434298	pseudogene	Chr16:58375477-58376068 (-)
129S1/SvImJ	ENSMUSG00200021275	pseudogene	Chr16:55251462-55252050 (-)
A/J	ENSMUSG00195025777	pseudogene	Chr16:54892946-54893534 (-)
AKR/J	ENSMUSG00220019999	pseudogene	Chr16:55275100-55275688 (-)
BALB/cJ	ENSMUSG00180024623	pseudogene	Chr16:55065004-55065592 (-)
C3H/HeJ	ENSMUSG00175018179	pseudogene	Chr16:55362863-55363451 (-)
C57BL/6NJ	ENSMUSG00215022215	pseudogene	Chr16:55182440-55183028 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014306	pseudogene	Chr16:55342306-55342894 (-)
CBA/J	ENSMUSG00210019742	pseudogene	Chr16:55348577-55349165 (-)
DBA/2J	ENSMUSG00185025668	pseudogene	Chr16:55242470-55243058 (-)
FVB/NJ	ENSMUSG00205010885	pseudogene	Chr16:55012385-55012973 (-)
JF1/MsJ	ENSUMUG00000027483	pseudogene	Chr16:55496730-55497318 (-)
LP/J	ENSMUSG00230008891	pseudogene	Chr16:57780216-57780804 (-)
NOD/ShiLtJ	ENSMUSG00190007293	pseudogene	Chr16:55285078-55285666 (-)
NZO/HlLtJ	ENSMUSG00225036029	pseudogene	Chr16:60911432-60912020 (-)
PWK/PhJ	ENSLUMG00010012154	pseudogene	Chr16:55247326-55247914 (-)
SPRET/EiJ	ENSMSPG00010001626	pseudogene	Chr16:55768243-55768830 (-)
WSB/EiJ	ENSIUOG00005009294	pseudogene	Chr16:55456819-55457407 (-)

Homology

• Gene Tree
  Gm20942
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000116914 (Evidence)
• NCBI Gene
  100048007

Representative Sequences			Length	Strain/Species
genomic	100048007	NCBI Gene Model | MGI Sequence Detail	580	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm20942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141636	Chr16:58376112-58376115 (-)	-58 bp