Gm20878 Gene Detail

Summary

• Symbol
  Gm20878
• Name
  predicted gene, 20878

• Feature Type
  protein coding gene
• IDs
  MGI:5434234
  NCBI Gene: 100041579
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:41941634-41942633 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434234	protein coding gene	Chr4:41941572-41943124 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0028151	protein coding gene	Chr4:38575624-38576747 (-)
C3H/HeJ	MGP_C3HHeJ_G0027873	protein coding gene	Chr4:39707545-39708668 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0028591	protein coding gene	Chr4:41565264-41566480 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0027850	protein coding gene	Chr4:42607896-42609018 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0026879	protein coding gene	Chr4:39893993-39895489 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm20878
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm20878
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS57268.1

• Ensembl
  ENSMUSG00000078747 (Evidence)
• NCBI Gene
  100041579

Representative Sequences			Length	Strain/Species
genomic	100041579	NCBI Gene Model | MGI Sequence Detail	1000	C57BL/6J
transcript	NM_001270431	RefSeq | MGI Sequence Detail	377	ZRU/MplStud
polypeptide	NP_001257360	RefSeq | MGI Sequence Detail	87	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:192799 Cattanach BM, et al., A further duplication involving chromosome 4, Dp(4)20H. Mouse Genome. 1996;94(3):680
• Latest
  J:193309 Mouse Genome Informatics Scientfic Curators, Curated associations of genes in MGI and UniProt sequence records. 2013;