Gm20789 Pseudogene Detail

Summary

• Symbol
  Gm20789
• Name
  predicted gene, 20789

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5434145
  NCBI Gene: 676982
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:50715509-50724942 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  224 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434145	pseudogene	Chr13:50715475-50729418 (+)
129S1/SvImJ	ENSMUSG00200036841	pseudogene	Chr13:47574759-47625262 (-)
129S1/SvImJ	ENSMUSG00200036669	pseudogene	Chr13:47844477-47853880 (+)
A/J	ENSMUSG00195030607	pseudogene	Chr13:46723792-46733195 (-)
AKR/J	ENSMUSG00220009932	pseudogene	Chr13:46557588-46566991 (-)
BALB/cJ	ENSMUSG00180009125	pseudogene	Chr13:47295855-47305258 (+)
BALB/cJ	ENSMUSG00180009435	pseudogene	Chr13:47060917-47111422 (-)
C3H/HeJ	ENSMUSG00175030160	pseudogene	Chr13:46813216-46822619 (-)
C57BL/6NJ	ENSMUSG00215006677	pseudogene	Chr13:46923804-46933207 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033189	pseudogene	Chr13:47130960-47140357 (-)
CBA/J	ENSMUSG00210028732	pseudogene	Chr13:47288122-47297525 (+)
CBA/J	ENSMUSG00210029016	pseudogene	Chr13:47053200-47103705 (-)
DBA/2J	ENSMUSG00185034330	pseudogene	Chr13:47867307-47917809 (-)
DBA/2J	ENSMUSG00185031863	pseudogene	Chr13:48137036-48146439 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230031123	pseudogene	Chr13:57188080-57238582 (-)
LP/J	ENSMUSG00230029339	pseudogene	Chr13:57457780-57467183 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225035439	pseudogene	Chr13:51208214-51217617 (+)
NZO/HlLtJ	ENSMUSG00225036946	pseudogene	Chr13:50938503-50989005 (-)
PWK/PhJ	ENSLUMG00010022871	pseudogene	Chr13:46184985-46233360 (-)
PWK/PhJ	ENSLUMG00010022675	pseudogene	Chr13:46427700-46437102 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005028628	pseudogene	Chr13:46280738-46287765 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20789
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000113354 (Evidence), ENSMUSG00000140146 (Evidence)
• NCBI Gene
  676982

Representative Sequences			Length	Strain/Species
genomic	676982	NCBI Gene Model | MGI Sequence Detail	9434	C57BL/6J

Other
Accession IDs

MGI:7806224

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69