Gm20734 Pseudogene Detail

Summary

• Symbol
  Gm20734
• Name
  predicted gene, 20734

• Feature Type
  pseudogene
• IDs
  MGI:5434090
  NCBI Gene: 257854
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:86224136-86224291 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434090	pseudogene	Chr2:86224104-86224296 (-)
129S1/SvImJ	ENSMUSG00200053848	pseudogene	Chr2:83245165-83245357 (-)
A/J	ENSMUSG00195053421	pseudogene	Chr2:83313103-83313296 (-)
AKR/J	ENSMUSG00220052672	pseudogene	Chr2:83191822-83192015 (-)
BALB/cJ	ENSMUSG00180054961	pseudogene	Chr2:83240798-83240991 (-)
C3H/HeJ	ENSMUSG00175054178	pseudogene	Chr2:83378849-83379042 (-)
C57BL/6NJ	ENSMUSG00215053660	pseudogene	Chr2:83330265-83330457 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052652	pseudogene	Chr2:82738079-82738271 (-)
CBA/J	ENSMUSG00210043546	pseudogene	Chr2:83406752-83406945 (-)
DBA/2J	ENSMUSG00185057128	pseudogene	Chr2:83237035-83237228 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000036151	pseudogene	Chr2:83174814-83174928 (-)
LP/J	ENSMUSG00230045704	pseudogene	Chr2:84988021-84988214 (-)
NOD/ShiLtJ	ENSMUSG00190052045	pseudogene	Chr2:83302739-83302932 (-)
NZO/HlLtJ	ENSMUSG00225053685	pseudogene	Chr2:92897790-92897983 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm20734
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm20734
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000111010 (Evidence)
• NCBI Gene
  257854

Representative Sequences			Length	Strain/Species
genomic	257854	NCBI Gene Model | MGI Sequence Detail	156	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087