Gm21870 Pseudogene Detail

Summary

• Symbol
  Gm21870
• Name
  predicted gene, 21870

• Feature Type
  pseudogene
• IDs
  MGI:5434034
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:33423113-33423479 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  38

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434034	pseudogene	ChrX:33423113-33423479 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220018083	pseudogene	ChrX:18373109-18374561 (-)
AKR/J	ENSMUSG00220018078	pseudogene	ChrX:18373211-18373575 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185029234	pseudogene	ChrX:1674150-1675604 (-)
DBA/2J	ENSMUSG00185030074	pseudogene	ChrX:233328-235289 (+)
DBA/2J	ENSMUSG00185031472	pseudogene	ChrX:3180673-3182603 (+)
DBA/2J	ENSMUSG00185030751	pseudogene	ChrX:4110174-4111626 (+)
DBA/2J	ENSMUSG00185030175	pseudogene	ChrX:801416-802870 (+)
DBA/2J	ENSMUSG00185030322	pseudogene	ChrX:1860148-2029095 (+)
DBA/2J	ENSMUSG00185030482	pseudogene	ChrX:2528559-2530013 (-)
DBA/2J	ENSMUSG00185030838	pseudogene	ChrX:4583809-4585263 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000018676	pseudogene	ChrX:17357984-17359438 (-)
JF1/MsJ	ENSUMUG00000017134	pseudogene	ChrX:1361067-1362521 (+)
JF1/MsJ	ENSUMUG00000017003	pseudogene	ChrX:6062961-6064415 (-)
JF1/MsJ	ENSUMUG00000019119	pseudogene	ChrX:14412653-14414107 (-)
JF1/MsJ	ENSUMUG00000019536	pseudogene	ChrX:15358329-15359783 (-)
LP/J	ENSMUSG00230010474	pseudogene	Chr13:8530861-8532822 (-)
LP/J	ENSMUSG00230010518	pseudogene	Chr13:9402680-9404134 (-)
LP/J	ENSMUSG00230007516	pseudogene	ChrX:5594408-5595862 (-)
LP/J	ENSMUSG00230007422	pseudogene	ChrX:2363302-2364756 (+)
LP/J	ENSMUSG00230010380	pseudogene	Chr13:7762010-7763971 (+)
LP/J	ENSMUSG00230007711	pseudogene	ChrX:3429323-3431284 (-)
LP/J	ENSMUSG00230007653	pseudogene	ChrX:9989684-9991138 (+)
LP/J	ENSMUSG00230010088	pseudogene	Chr13:7537274-7539235 (+)
LP/J	ENSMUSG00230009853	pseudogene	Chr13:2474911-2476872 (+)
LP/J	ENSMUSG00230007591	pseudogene	ChrX:7561632-7563084 (-)
LP/J	ENSMUSG00230007284	pseudogene	ChrX:3224051-3225505 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225038281	pseudogene	ChrX:8797760-8799721 (-)
NZO/HlLtJ	ENSMUSG00225038625	pseudogene	ChrX:8573039-8575000 (-)
NZO/HlLtJ	ENSMUSG00225034970	pseudogene	Chr13:890082-892043 (-)
NZO/HlLtJ	ENSMUSG00225038309	pseudogene	ChrX:9450730-9452184 (-)
NZO/HlLtJ	ENSMUSG00225038386	pseudogene	ChrX:3818445-3820406 (-)
NZO/HlLtJ	ENSMUSG00225037966	pseudogene	ChrX:3613147-3614601 (-)
NZO/HlLtJ	ENSMUSG00225038480	pseudogene	ChrX:5825386-5827347 (-)
NZO/HlLtJ	ENSMUSG00225046462	pseudogene	ChrX:13902567-13904019 (+)
NZO/HlLtJ	ENSMUSG00225038515	pseudogene	ChrX:6697122-6698576 (-)
NZO/HlLtJ	ENSMUSG00225046484	pseudogene	ChrX:14369801-14371255 (+)
NZO/HlLtJ	ENSMUSG00225038074	pseudogene	ChrX:2815040-2816494 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm21870
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40

• Ensembl
  ENSMUSG00000118488 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118488	Ensembl Gene Model | MGI Sequence Detail	367	C57BL/6J
transcript	ENSMUST00000179028	Ensembl | MGI Sequence Detail	367	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;