Gm21847 Gene Detail

Summary

• Symbol
  Gm21847
• Name
  predicted gene, 21847
• Synonyms
  Gm38698

• Feature Type
  lncRNA gene
• IDs
  MGI:5434011
  NCBI Gene: 105242428
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:15716561-15730865 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  49

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434011	lncRNA gene	Chr5:15716561-15861677 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195042952	lncRNA gene	Chr5:10830612-10833706 (+)
A/J	ENSMUSG00195041572	lncRNA gene	Chr5:10881780-10897260 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180027198	lncRNA gene	Chr5:10621745-10709854 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215041958	lncRNA gene	Chr5:21944995-21957764 (-)
C57BL/6NJ	ENSMUSG00215025870	lncRNA gene	Chr5:11310850-11348659 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003632	lncRNA gene	Chr5:11109329-11126252 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185018106	lncRNA gene	Chr5:12780377-12795359 (-)
DBA/2J	ENSMUSG00185018075	lncRNA gene	Chr5:12509373-12558843 (+)
DBA/2J	ENSMUSG00185017523	lncRNA gene	Chr5:13181795-13322093 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000003715	lncRNA gene	Chr5:14191172-14200423 (+)
JF1/MsJ	ENSUMUG00000003430	lncRNA gene	Chr5:14399360-14414335 (-)
JF1/MsJ	ENSUMUG00000003756	lncRNA gene	Chr5:15188398-15197594 (+)
JF1/MsJ	ENSUMUG00000003373	lncRNA gene	Chr5:16243325-16252487 (-)
JF1/MsJ	ENSUMUG00000003392	lncRNA gene	Chr5:16960113-17088400 (+)
JF1/MsJ	ENSUMUG00000003846	lncRNA gene	Chr5:17207974-17217164 (+)
JF1/MsJ	ENSUMUG00000003620	lncRNA gene	Chr5:13009311-13018517 (-)
JF1/MsJ	ENSUMUG00000003803	lncRNA gene	Chr5:15934234-15949013 (-)
JF1/MsJ	ENSUMUG00000003449	lncRNA gene	Chr5:14457293-14469363 (+)
JF1/MsJ	ENSUMUG00000003515	lncRNA gene	Chr5:16664362-16676700 (+)
JF1/MsJ	ENSUMUG00000003380	lncRNA gene	Chr5:16267240-16376055 (+)
JF1/MsJ	ENSUMUG00000003329	lncRNA gene	Chr5:13617294-13758843 (-)
JF1/MsJ	ENSUMUG00000003686	lncRNA gene	Chr5:13892418-13904440 (-)
JF1/MsJ	ENSUMUG00000003740	lncRNA gene	Chr5:14971052-14980251 (+)
JF1/MsJ	ENSUMUG00000003652	lncRNA gene	Chr5:13329449-13338635 (+)
JF1/MsJ	ENSUMUG00000003346	lncRNA gene	Chr5:14056838-14066038 (+)
JF1/MsJ	ENSUMUG00000003642	lncRNA gene	Chr5:13286657-13301432 (-)
JF1/MsJ	ENSUMUG00000003706	lncRNA gene	Chr5:14135209-14144416 (+)
JF1/MsJ	ENSUMUG00000003790	lncRNA gene	Chr5:15837736-15889632 (-)
JF1/MsJ	ENSUMUG00000003780	lncRNA gene	Chr5:15639010-15654018 (+)
JF1/MsJ	ENSUMUG00000003554	lncRNA gene	Chr5:17680097-17718165 (+)
JF1/MsJ	ENSUMUG00000003411	lncRNA gene	Chr5:17550858-17640304 (+)
JF1/MsJ	ENSUMUG00000003767	lncRNA gene	Chr5:15541875-15551091 (+)
JF1/MsJ	ENSUMUG00000003356	lncRNA gene	Chr5:15289121-15417381 (+)
JF1/MsJ	ENSUMUG00000003536	lncRNA gene	Chr5:16851783-16913442 (+)
JF1/MsJ	ENSUMUG00000003572	lncRNA gene	Chr5:17839945-17897111 (+)
JF1/MsJ	ENSUMUG00000003632	lncRNA gene	Chr5:13056262-13065474 (-)
LP/J	ENSMUSG00230003798	lncRNA gene	Chr5:17666259-17875491 (+)
LP/J	ENSMUSG00230003988	lncRNA gene	Chr5:17214585-17229578 (-)
LP/J	ENSMUSG00230003934	lncRNA gene	Chr5:16246856-16348049 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225010117	lncRNA gene	Chr5:20485431-20555069 (+)
NZO/HlLtJ	ENSMUSG00225010183	lncRNA gene	Chr5:20225235-20240118 (+)
NZO/HlLtJ	ENSMUSG00225010045	lncRNA gene	Chr5:23046502-23186693 (+)
NZO/HlLtJ	ENSMUSG00225010126	lncRNA gene	Chr5:20815664-20836853 (+)
NZO/HlLtJ	ENSMUSG00225010213	lncRNA gene	Chr5:21402245-21417639 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010031843	lncRNA gene	Chr5:11599836-11616683 (+)
WSB/EiJ	ENSIUOG00005033526	lncRNA gene	Chr5:11419172-11431199 (-)
WSB/EiJ	ENSIUOG00005033203	lncRNA gene	Chr5:13275779-13297603 (+)
WSB/EiJ	ENSIUOG00005033552	lncRNA gene	Chr5:13209524-13230681 (+)

Homology

• Gene Tree
  Gm21847
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm21847
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  1

• Ensembl
  ENSMUSG00000094230 (Evidence)
• NCBI Gene
  105242428

Representative Sequences			Length	Strain/Species
genomic	105242428	NCBI Gene Model | MGI Sequence Detail	14305	C57BL/6J
transcript	AK133285	GenBank | ENA | DDBJ | MGI Sequence Detail	2401	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5621583

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;