Gm21816 Pseudogene Detail

Summary

• Symbol
  Gm21816
• Name
  predicted gene, 21816

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5433980
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:77196875-77199898 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5433980	pseudogene	Chr16:77196875-77199898 (+)
129S1/SvImJ	ENSMUSG00200016155	unclassified gene	Chr16:74072834-74075982 (+)
A/J	ENSMUSG00195023625	unclassified gene	Chr16:73856289-73859436 (+)
AKR/J	ENSMUSG00220018363	unclassified gene	Chr16:74040129-74043277 (+)
BALB/cJ	ENSMUSG00180002200	unclassified gene	Chr16:73931617-73934765 (+)
C3H/HeJ	ENSMUSG00175009333	unclassified gene	Chr16:74219208-74222356 (+)
C57BL/6NJ	ENSMUSG00215001697	unclassified gene	Chr16:74055505-74058653 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000735	unclassified gene	Chr16:72564715-72567993 (+)
CAST/EiJ	ENSTCUG00005007791	unclassified gene	Chr16:73869774-73872930 (+)
CBA/J	ENSMUSG00210019948	unclassified gene	Chr16:74164278-74167426 (+)
DBA/2J	ENSMUSG00185005419	unclassified gene	Chr16:74090974-74094121 (+)
FVB/NJ	ENSMUSG00205016149	unclassified gene	Chr16:73951737-73954885 (+)
JF1/MsJ	ENSUMUG00000012583	unclassified gene	Chr16:74245034-74248171 (+)
LP/J	ENSMUSG00230019635	unclassified gene	Chr16:76659150-76662298 (+)
NOD/ShiLtJ	ENSMUSG00190011561	unclassified gene	Chr16:74090489-74093637 (+)
NZO/HlLtJ	ENSMUSG00225029508	unclassified gene	Chr16:79864524-79867671 (+)
PWK/PhJ	ENSLUMG00010005176	unclassified gene	Chr16:73898593-73901733 (+)
SPRET/EiJ	ENSMSPG00010015776	unclassified gene	Chr16:74771944-74775087 (+)
WSB/EiJ	ENSIUOG00005017637	unclassified gene	Chr16:74081761-74084909 (+)

Homology

• Gene Tree
  Gm21816
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  2
• Genomic Mutations
  3 involving Gm21816
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000096870 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096870	Ensembl Gene Model | MGI Sequence Detail	3024	C57BL/6J
transcript	ENSMUST00000193546	Ensembl | MGI Sequence Detail	2999	Not Applicable

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 7
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:339533 Duchon A, et al., Multi-influential genetic interactions alter behaviour and cognition through six main biological cascades in Down syndrome mouse models. Hum Mol Genet. 2021 May 28;30(9):771-788

TSS for Gm21816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139070	Chr16:77196839-77196852 (+)	-29 bp