Gm21814 Gene Detail

Summary

• Symbol
  Gm21814
• Name
  predicted gene, 21814
• Synonyms
  6620401J10Rik

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5433978
  NCBI Gene: 436100
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:149467349-149487111 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  319 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5433978	protein coding gene	Chr6:149467349-149487661 (+)
129S1/SvImJ	ENSMUSG00200002818	protein coding gene	Chr6:146988590-147008634 (+)
129S1/SvImJ	ENSMUSG00200003883	lncRNA gene	Chr6:146988588-147008156 (+)
A/J	ENSMUSG00195003833	lncRNA gene	Chr6:145895270-145914842 (+)
A/J	ENSMUSG00195003732	protein coding gene	Chr6:145895272-145915320 (+)
AKR/J	ENSMUSG00220012450	protein coding gene	Chr6:144166719-144186763 (+)
AKR/J	ENSMUSG00220012746	lncRNA gene	Chr6:144166717-144186285 (+)
BALB/cJ	ENSMUSG00180002568	lncRNA gene	Chr6:146022273-146041841 (+)
BALB/cJ	ENSMUSG00180002397	protein coding gene	Chr6:146022275-146042319 (+)
C3H/HeJ	ENSMUSG00175002458	protein coding gene	Chr6:145977883-145997927 (+)
C3H/HeJ	ENSMUSG00175002487	lncRNA gene	Chr6:145977881-145997449 (+)
C57BL/6NJ	ENSMUSG00215003724	lncRNA gene	Chr6:146125012-146144576 (+)
C57BL/6NJ	ENSMUSG00215003440	protein coding gene	Chr6:146125014-146145054 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006472	lincRNA gene	Chr6:147253254-147254161 (+)
CAST/EiJ	ENSTCUG00005011241	lncRNA gene	Chr6:146762909-146782544 (+)
CBA/J	ENSMUSG00210004826	protein coding gene	Chr6:146035902-146055942 (+)
CBA/J	ENSMUSG00210005224	lncRNA gene	Chr6:146035900-146055464 (+)
DBA/2J	ENSMUSG00185015915	lncRNA gene	Chr6:146679801-146699369 (+)
DBA/2J	ENSMUSG00185015450	protein coding gene	Chr6:146679803-146699847 (+)
FVB/NJ	ENSMUSG00205000048	protein coding gene	Chr6:145023562-145043606 (+)
FVB/NJ	ENSMUSG00205000069	lncRNA gene	Chr6:145023560-145043128 (+)
JF1/MsJ	ENSUMUG00000014618	lncRNA gene	Chr6:145320710-145340255 (+)
LP/J	ENSMUSG00230005664	lncRNA gene	Chr6:147758917-147778481 (+)
LP/J	ENSMUSG00230004337	protein coding gene	Chr6:147758919-147778959 (+)
NOD/ShiLtJ	ENSMUSG00190002221	protein coding gene	Chr6:146511100-146531140 (+)
NOD/ShiLtJ	ENSMUSG00190002473	lncRNA gene	Chr6:146511098-146530662 (+)
NZO/HlLtJ	ENSMUSG00225012627	protein coding gene	Chr6:150669647-150689692 (+)
NZO/HlLtJ	ENSMUSG00225013811	lncRNA gene	Chr6:150669645-150689214 (+)
PWK/PhJ	ENSLUMG00010002398	lncRNA gene	Chr6:144383698-144403266 (+)
SPRET/EiJ	ENSMSPG00010016417	lncRNA gene	Chr6:148340851-148361624 (+)
WSB/EiJ	ENSIUOG00005005146	lncRNA gene	Chr6:146735705-146755599 (+)

Homology

• Gene Tree
  Gm21814
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000096299 (Evidence)
• NCBI Gene
  436100

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096299	Ensembl Gene Model | MGI Sequence Detail	19763	C57BL/6J
transcript	ENSMUST00000144085	Ensembl | MGI Sequence Detail	2531	Not Applicable
polypeptide	NP_001347880	RefSeq | MGI Sequence Detail	723	ZRU/MplStud

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR001909 Krueppel-associated box
  IPR036051 Krueppel-associated box domain superfamily
  IPR036236 Zinc finger C2H2 superfamily
  IPR050758 Zinc finger protein, C2H2-type

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:1918704

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:247966 Kauzlaric A, et al., The mouse genome displays highly dynamic populations of KRAB-zinc finger protein genes and related genetic units. PLoS One. 2017;12(3):e0173746

TSS for Gm21814:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59670	Chr6:149467565-149467614 (+)	241 bp
Tssr59671	Chr6:149467631-149467648 (+)	291 bp