Lincred1 Gene Detail

Summary

• Symbol
  Lincred1
• Name
  long intergenic non-protein coding RNA of erythroid differentiation 1
• Synonyms
  red1-dwarf, red1-giant

• Feature Type
  lncRNA gene
• IDs
  MGI:5428668
  NCBI Gene: 100996933
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:103731296-103744313 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  398 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5428668	lncRNA gene	Chr2:103729058-103781161 (+)
129S1/SvImJ	ENSMUSG00200002444	lncRNA gene	Chr2:100552637-100555500 (+)
A/J	ENSMUSG00195000675	lncRNA gene	Chr2:100721487-100724350 (+)
AKR/J	ENSMUSG00220001613	lncRNA gene	Chr2:100471598-100474461 (+)
BALB/cJ	ENSMUSG00180020724	lncRNA gene	Chr2:100522556-100525419 (+)
C3H/HeJ	ENSMUSG00175010093	lncRNA gene	Chr2:100802008-100804871 (+)
C57BL/6NJ	ENSMUSG00215020500	lncRNA gene	Chr2:100618870-100621732 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001637	lncRNA gene	Chr2:99882055-99884918 (+)
CBA/J	ENSMUSG00210002263	lncRNA gene	Chr2:100800336-100803199 (+)
DBA/2J	ENSMUSG00185005677	lncRNA gene	Chr2:100519387-100522250 (+)
FVB/NJ	ENSMUSG00205011257	lncRNA gene	Chr2:99841675-99844537 (+)
JF1/MsJ	ENSUMUG00000027607	lncRNA gene	Chr2:100206715-100209576 (+)
LP/J	ENSMUSG00230000950	lncRNA gene	Chr2:102268716-102271579 (+)
NOD/ShiLtJ	ENSMUSG00190024234	lncRNA gene	Chr2:100625122-100627984 (+)
NZO/HlLtJ	ENSMUSG00225009081	lncRNA gene	Chr2:110175327-110178190 (+)
PWK/PhJ	ENSLUMG00010025112	lncRNA gene	Chr2:100214978-100217778 (+)
SPRET/EiJ	ENSMSPG00010037074	lncRNA gene	Chr2:102241177-102244060 (+)
WSB/EiJ	ENSIUOG00005001501	lncRNA gene	Chr2:100318314-100321177 (+)

Homology

• Gene Tree
  Lincred1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Lincred1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  1

• Ensembl
  ENSMUSG00000120246 (Evidence)
• NCBI Gene
  100996933

Representative Sequences			Length	Strain/Species
genomic	100996933	NCBI Gene Model | MGI Sequence Detail	13018	C57BL/6J
transcript	NR_131913	RefSeq | MGI Sequence Detail	4916	ZRU/MplStud

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:326411 Paralkar VR, et al., Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development. Blood. 2014 Mar 20;123(12):1927-37

TSS for Lincred1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19175	Chr2:103734803-103734839 (+)	3,525 bp