Gm20647 Gene Detail

Summary

• Symbol
  Gm20647
• Name
  predicted gene 20647

• Feature Type
  lncRNA gene
• IDs
  MGI:5313094
  NCBI Gene: 102637215
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:72473671-72525391 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 38.44 cM

Strain
Comparison

• SNPs within 2kb
  1575 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313094	lncRNA gene	Chr5:72473671-72525391 (+)
129S1/SvImJ	ENSMUSG00200036206	lncRNA gene	Chr5:68130983-68182678 (+)
A/J	ENSMUSG00195035951	lncRNA gene	Chr5:67455182-67506874 (+)
AKR/J	ENSMUSG00220004741	lncRNA gene	Chr5:67566849-67618545 (+)
BALB/cJ	ENSMUSG00180023622	lncRNA gene	Chr5:67212190-67263888 (+)
C3H/HeJ	ENSMUSG00175030468	lncRNA gene	Chr5:69264240-69314106 (+)
C57BL/6NJ	ENSMUSG00215006526	lncRNA gene	Chr5:68046345-68098039 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003690	antisense lncRNA gene	Chr5:65260186-65308510 (+)
CAST/EiJ	ENSTCUG00005033394	lncRNA gene	Chr5:67017245-67066097 (+)
CBA/J	ENSMUSG00210023744	lncRNA gene	Chr5:68202427-68252282 (+)
DBA/2J	ENSMUSG00185005815	lncRNA gene	Chr5:70032064-70081924 (+)
FVB/NJ	ENSMUSG00205033023	lncRNA gene	Chr5:67007559-67059257 (+)
JF1/MsJ	ENSUMUG00000007156	lncRNA gene	Chr5:74512597-74558792 (+)
LP/J	ENSMUSG00230022076	lncRNA gene	Chr5:74705406-74757101 (+)
NOD/ShiLtJ	ENSMUSG00190004426	lncRNA gene	Chr5:67130990-67180824 (+)
NZO/HlLtJ	ENSMUSG00225010401	lncRNA gene	Chr5:79775568-79827263 (+)
PWK/PhJ	ENSLUMG00010014958	lncRNA gene	Chr5:67097958-67144666 (+)
SPRET/EiJ	ENSMSPG00010038535	lncRNA gene	Chr5:69074283-69120612 (+)
WSB/EiJ	ENSIUOG00005019485	lncRNA gene	Chr5:69981786-70039724 (+)

Homology

• Gene Tree
  Gm20647
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm20647
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000093400 (Evidence)
• NCBI Gene
  102637215

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093400	Ensembl Gene Model | MGI Sequence Detail	51721	C57BL/6J
transcript	ENSMUST00000176396	Ensembl | MGI Sequence Detail	857	Not Applicable

References

• Summaries
  All 22

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707