Gm20646 MGI Mouse Gene Detail - MGI:5313093

Sequence Map

Chr1:42723698-42783951 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313093	lncRNA gene	Chr1:42723408-42783959 (+)
129S1/SvImJ	ENSMUSG00200004461	lncRNA gene	Chr1:40347780-40397671 (+)
A/J	ENSMUSG00195043220	lncRNA gene	Chr1:40054343-40104245 (+)
AKR/J	ENSMUSG00220009427	lncRNA gene	Chr1:40048624-40098502 (+)
BALB/cJ	ENSMUSG00180012507	lncRNA gene	Chr1:40074996-40124871 (+)
C3H/HeJ	ENSMUSG00175001401	lncRNA gene	Chr1:40062110-40112008 (+)
C57BL/6NJ	ENSMUSG00215030354	lncRNA gene	Chr1:40050071-40099951 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034635	sense overlapping lncRNA gene	Chr1:37235786-37286427 (+)
CAST/EiJ	ENSTCUG00005003207	lncRNA gene	Chr1:40129282-40179316 (+)
CBA/J	ENSMUSG00210006207	lncRNA gene	Chr1:39813634-39863527 (+)
DBA/2J	ENSMUSG00185011361	lncRNA gene	Chr1:40914776-40964665 (+)
FVB/NJ	ENSMUSG00205035566	lncRNA gene	Chr1:40007337-40057244 (+)
JF1/MsJ	ENSUMUG00000029525	lncRNA gene	Chr1:40136319-40189139 (+)
LP/J	ENSMUSG00230027203	lncRNA gene	Chr1:40960661-41010550 (+)
NOD/ShiLtJ	ENSMUSG00190042435	lncRNA gene	Chr1:40027142-40077025 (+)
NZO/HlLtJ	ENSMUSG00225000785	lncRNA gene	Chr1:44197592-44247490 (+)
PWK/PhJ	ENSLUMG00010036837	lncRNA gene	Chr1:39653995-39709948 (+)
SPRET/EiJ	ENSMSPG00010013558	lncRNA gene	Chr1:41226440-41276533 (+)
WSB/EiJ	ENSIUOG00005041185	lncRNA gene	Chr1:39962977-40013127 (+)

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
6 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Comparison Matrix

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Representative Sequences				Length	Strain/Species	Flank
	genomic	108167623	NCBI Gene Model \| MGI Sequence Detail	60254	C57BL/6J	± kb
	transcript	NR_168292	RefSeq \| MGI Sequence Detail	1485	ZRU/MplStud

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MGI:5825728

Summaries

All 12

Phenotypes 6
Earliest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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