Gm20642 Gene Detail

Summary

• Symbol
  Gm20642
• Name
  predicted gene 20642

• Feature Type
  lncRNA gene
• IDs
  MGI:5313089
  NCBI Gene: 102634076
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:38930662-38971703 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.22 cM

Strain
Comparison

• SNPs within 2kb
  1182 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313089	lncRNA gene	Chr14:38930662-38988140 (+)
129S1/SvImJ	ENSMUSG00200038189	lncRNA gene	Chr14:30825346-30855709 (+)
A/J	ENSMUSG00195015181	lncRNA gene	Chr14:31849417-31879779 (+)
AKR/J	ENSMUSG00220037055	lncRNA gene	Chr14:30996162-31026537 (+)
BALB/cJ	ENSMUSG00180029806	lncRNA gene	Chr14:30933799-30964163 (+)
C3H/HeJ	ENSMUSG00175040942	lncRNA gene	Chr14:31010242-31040607 (+)
C57BL/6NJ	ENSMUSG00215033659	lncRNA gene	Chr14:31246651-31277020 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002870	antisense lncRNA gene	Chr14:31271526-31305658 (+)
CAST/EiJ	ENSTCUG00005024309	lncRNA gene	Chr14:31000093-31030048 (+)
CBA/J	ENSMUSG00210044477	lncRNA gene	Chr14:31258973-31289329 (+)
DBA/2J	ENSMUSG00185014654	lncRNA gene	Chr14:35492339-35522689 (+)
FVB/NJ	ENSMUSG00205038604	lncRNA gene	Chr14:31121346-31151778 (+)
JF1/MsJ	ENSUMUG00000034623	lncRNA gene	Chr14:42800446-42835732 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190019391	lncRNA gene	Chr14:31305878-31336293 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010023570	lncRNA gene	Chr14:19339974-19370240 (+)
SPRET/EiJ	ENSMSPG00010003700	lncRNA gene	Chr14:33027288-33059316 (+)
WSB/EiJ	ENSIUOG00005012524	lncRNA gene	Chr14:31072345-31102716 (+)

Homology

• Gene Tree
  Gm20642
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000093383 (Evidence)
• NCBI Gene
  102634076

Representative Sequences			Length	Strain/Species
genomic	102634076	NCBI Gene Model | MGI Sequence Detail	41042	C57BL/6J
transcript	AK133078	GenBank | ENA | DDBJ | MGI Sequence Detail	1516	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm20642:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125124	Chr14:38942066-38942082 (+)	11,412 bp
Tssr125125	Chr14:38942096-38942098 (+)	11,435 bp