Gm20628 Gene Detail

Summary

• Symbol
  Gm20628
• Name
  predicted gene 20628

• Feature Type
  lncRNA gene
• IDs
  MGI:5313075
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:96174391-96177605 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.71 cM

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313075	lncRNA gene	Chr3:96174391-96177605 (-)
129S1/SvImJ	ENSMUSG00200044490	lncRNA gene	Chr3:92842408-92845622 (-)
A/J	ENSMUSG00195048280	lncRNA gene	Chr3:93170721-93173935 (-)
AKR/J	ENSMUSG00220043368	lncRNA gene	Chr3:91553626-91556840 (-)
BALB/cJ	ENSMUSG00180041006	lncRNA gene	Chr3:93162326-93165541 (-)
C3H/HeJ	ENSMUSG00175029727	lncRNA gene	Chr3:92800345-92803559 (-)
C57BL/6NJ	ENSMUSG00215039135	lncRNA gene	Chr3:93529556-93532770 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003407	antisense lncRNA gene	Chr3:90352589-90355849 (-)
CAST/EiJ	ENSTCUG00005020935	lncRNA gene	Chr3:93357077-93360291 (-)
CBA/J	ENSMUSG00210051376	lncRNA gene	Chr3:93352063-93355277 (-)
DBA/2J	ENSMUSG00185044723	lncRNA gene	Chr3:93770584-93773798 (-)
FVB/NJ	ENSMUSG00205050843	lncRNA gene	Chr3:92452951-92456165 (-)
JF1/MsJ	ENSUMUG00000047872	lncRNA gene	Chr3:92646136-92649357 (-)
LP/J	ENSMUSG00230045813	lncRNA gene	Chr3:95705777-95708991 (-)
NOD/ShiLtJ	ENSMUSG00190047791	lncRNA gene	Chr3:93871984-93875194 (-)
NZO/HlLtJ	ENSMUSG00225012274	lncRNA gene	Chr3:98124459-98127674 (-)
PWK/PhJ	ENSLUMG00010032384	lncRNA gene	Chr3:92627742-92630973 (-)
SPRET/EiJ	ENSMSPG00010045763	lncRNA gene	Chr3:92930716-92933947 (-)
WSB/EiJ	ENSIUOG00005034812	lncRNA gene	Chr3:93272748-93275963 (-)

Homology

• Gene Tree
  Gm20628
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm20628
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000093656 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093656	Ensembl Gene Model | MGI Sequence Detail	3215	C57BL/6J
transcript	ENSMUST00000177363	Ensembl | MGI Sequence Detail	3215	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm20628:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34613	Chr3:96176751-96176789 (-)	835 bp