Gm20611 Gene Detail

Summary

• Symbol
  Gm20611
• Name
  predicted gene 20611

• Feature Type
  lncRNA gene
• IDs
  MGI:5313058
  NCBI Gene: 327760
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:60867082-60873859 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 32.13 cM

Strain
Comparison

• SNPs within 2kb
  319 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313058	lncRNA gene	Chr10:60865124-60873898 (+)
129S1/SvImJ	ENSMUSG00200029187	lncRNA gene	Chr10:57533015-57539792 (+)
A/J	ENSMUSG00195028954	lncRNA gene	Chr10:57845531-57852310 (+)
AKR/J	ENSMUSG00220042536	lncRNA gene	Chr10:57537705-57544484 (+)
BALB/cJ	ENSMUSG00180028866	lncRNA gene	Chr10:57887820-57894597 (+)
C3H/HeJ	ENSMUSG00175026008	lncRNA gene	Chr10:57740265-57747044 (+)
C57BL/6NJ	ENSMUSG00215034503	lncRNA gene	Chr10:57485938-57492715 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004640	lincRNA gene	Chr10:55514600-55521370 (+)
CAST/EiJ	ENSTCUG00005030474	lncRNA gene	Chr10:57533377-57540188 (+)
CBA/J	ENSMUSG00210039403	lncRNA gene	Chr10:57618572-57625349 (+)
DBA/2J	ENSMUSG00185042979	lncRNA gene	Chr10:57965334-57972111 (+)
FVB/NJ	ENSMUSG00205035268	lncRNA gene	Chr10:57638916-57645693 (+)
JF1/MsJ	ENSUMUG00000021502	lncRNA gene	Chr10:59201248-59208051 (+)
LP/J	ENSMUSG00230023585	lncRNA gene	Chr10:59768499-59775276 (+)
NOD/ShiLtJ	ENSMUSG00190037363	lncRNA gene	Chr10:57951147-57957924 (+)
NZO/HlLtJ	ENSMUSG00225045710	lncRNA gene	Chr10:64049432-64056209 (+)
PWK/PhJ	ENSLUMG00010023707	lncRNA gene	Chr10:57555350-57562195 (+)
SPRET/EiJ	ENSMSPG00010028167	lncRNA gene	Chr10:59157123-59163811 (+)
WSB/EiJ	ENSIUOG00005042267	lncRNA gene	Chr10:57522755-57529538 (+)

Homology

• Gene Tree
  Gm20611
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20611
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000093568 (Evidence)
• NCBI Gene
  327760

Representative Sequences			Length	Strain/Species
genomic	327760	NCBI Gene Model | MGI Sequence Detail	6778	C57BL/6J
transcript	NR_040638	RefSeq | MGI Sequence Detail	1131	C57BL/6

Molecular
Reagents

• All nucleic 4

  Genomic 1

  cDNA 3

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm20611:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93644	Chr10:60867047-60867086 (+)	-15 bp