Gm20596 Pseudogene Detail

Summary

• Symbol
  Gm20596
• Name
  predicted gene, 20596

• Feature Type
  pseudogene
• IDs
  MGI:5295702
  NCBI Gene: 100463527
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:48367380-48367532 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 23.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295702	pseudogene	Chr17:48367380-48367532 (-)
129S1/SvImJ	ENSMUSG00200028376	pseudogene	Chr17:43576077-43576229 (-)
A/J	ENSMUSG00195022613	pseudogene	Chr17:45075389-45075541 (-)
AKR/J	ENSMUSG00220038234	pseudogene	Chr17:44075410-44075562 (-)
BALB/cJ	ENSMUSG00180027730	pseudogene	Chr17:44831758-44831910 (-)
C3H/HeJ	ENSMUSG00175016757	pseudogene	Chr17:44139283-44139435 (-)
C57BL/6NJ	ENSMUSG00215033723	pseudogene	Chr17:43691663-43691815 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026395	pseudogene	Chr17:44852103-44852255 (-)
CBA/J	ENSMUSG00210038272	pseudogene	Chr17:43888894-43889046 (-)
DBA/2J	ENSMUSG00185029998	pseudogene	Chr17:46787889-46788041 (-)
FVB/NJ	ENSMUSG00205053160	pseudogene	Chr17:44388319-44388471 (-)
JF1/MsJ	ENSUMUG00000038318	pseudogene	Chr17:46430593-46430745 (-)
LP/J	ENSMUSG00230042047	pseudogene	Chr17:47687577-47687729 (-)
NOD/ShiLtJ	ENSMUSG00190017790	pseudogene	Chr17:43779226-43779378 (-)
NZO/HlLtJ	ENSMUSG00225044396	pseudogene	Chr17:49940813-49940965 (-)
PWK/PhJ	ENSLUMG00010037630	pseudogene	Chr17:43650548-43650700 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005027629	pseudogene	Chr17:44737221-44737373 (-)

Homology

• Gene Tree
  Gm20596
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000117308 (Evidence)
• NCBI Gene
  100463527

Representative Sequences			Length	Strain/Species
genomic	100463527	NCBI Gene Model | MGI Sequence Detail	153	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;