Gm20586 Pseudogene Detail

Summary

• Symbol
  Gm20586
• Name
  predicted gene, 20586

• Feature Type
  pseudogene
• IDs
  MGI:5295692
  NCBI Gene: 100417493
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:55985326-55985872 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 29.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295692	pseudogene	Chr8:55985319-55985872 (+)
129S1/SvImJ	ENSMUSG00200007362	pseudogene	Chr8:50796463-50797009 (+)
A/J	ENSMUSG00195012835	pseudogene	Chr8:51187989-51188535 (+)
AKR/J	ENSMUSG00220005828	pseudogene	Chr8:51152364-51152910 (-)
BALB/cJ	ENSMUSG00180014210	pseudogene	Chr8:50866758-50867304 (+)
C3H/HeJ	ENSMUSG00175007741	pseudogene	Chr8:51042092-51042638 (+)
C57BL/6NJ	ENSMUSG00215011198	pseudogene	Chr8:50790135-50790681 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006670	pseudogene	Chr8:50618108-50618653 (+)
CBA/J	ENSMUSG00210009087	pseudogene	Chr8:50880270-50880816 (+)
DBA/2J	ENSMUSG00185008448	pseudogene	Chr8:57026234-57026780 (+)
FVB/NJ	ENSMUSG00205002826	pseudogene	Chr8:50055471-50056016 (+)
JF1/MsJ	ENSUMUG00000006574	pseudogene	Chr8:59348436-59348977 (+)
JF1/MsJ	ENSUMUG00000006441	pseudogene	Chr8:58640525-58641070 (+)
JF1/MsJ	ENSUMUG00000006516	pseudogene	Chr8:59211058-59211603 (+)
JF1/MsJ	ENSUMUG00000006421	pseudogene	Chr8:58331678-58332223 (+)
JF1/MsJ	ENSUMUG00000005467	pseudogene	Chr8:58745582-58746127 (+)
LP/J	ENSMUSG00230006698	pseudogene	Chr8:60684074-60684620 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225030994	pseudogene	Chr8:64091606-64092152 (+)
PWK/PhJ	ENSLUMG00010013794	pseudogene	Chr8:50733046-50733592 (+)
SPRET/EiJ	ENSMSPG00010015602	pseudogene	Chr8:51673506-51674042 (-)
SPRET/EiJ	ENSMSPG00010014669	pseudogene	Chr8:51764171-51764708 (-)
WSB/EiJ	ENSIUOG00005016946	pseudogene	Chr8:51708309-51708855 (+)

Homology

• Gene Tree
  Gm20586
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20586
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000110025 (Evidence)
• NCBI Gene
  100417493

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110025	Ensembl Gene Model | MGI Sequence Detail	547	C57BL/6J
transcript	ENSMUST00000210122	Ensembl | MGI Sequence Detail	547	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;