Gm20570 Pseudogene Detail

Summary

• Symbol
  Gm20570
• Name
  predicted gene, 20570

• Feature Type
  pseudogene
• IDs
  MGI:5295677
  NCBI Gene: 100048142
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:75900214-75900345 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 51.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295677	pseudogene	Chr18:75900139-75900610 (+)
129S1/SvImJ	ENSMUSG00200030054	pseudogene	Chr18:73124140-73124269 (+)
A/J	ENSMUSG00195004981	pseudogene	Chr18:73190144-73190273 (+)
AKR/J	ENSMUSG00220018199	pseudogene	Chr18:73128904-73129033 (+)
BALB/cJ	ENSMUSG00180013575	pseudogene	Chr18:73760759-73760888 (+)
C3H/HeJ	ENSMUSG00175012619	pseudogene	Chr18:73314278-73314409 (+)
C57BL/6NJ	ENSMUSG00215026334	pseudogene	Chr18:72664133-72664264 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030254	pseudogene	Chr18:72232669-72232800 (+)
CBA/J	ENSMUSG00210034783	pseudogene	Chr18:73271640-73271771 (+)
DBA/2J	ENSMUSG00185011640	pseudogene	Chr18:73177895-73178026 (+)
FVB/NJ	ENSMUSG00205017339	pseudogene	Chr18:72783007-72783138 (+)
JF1/MsJ	ENSUMUG00000037672	pseudogene	Chr18:73097005-73097134 (+)
LP/J	ENSMUSG00230014573	pseudogene	Chr18:75239745-75239874 (+)
NOD/ShiLtJ	ENSMUSG00190025478	pseudogene	Chr18:72928265-72928396 (+)
NZO/HlLtJ	ENSMUSG00225034933	pseudogene	Chr18:75093575-75093706 (+)
PWK/PhJ	ENSLUMG00010006958	pseudogene	Chr18:73505119-73505248 (+)
SPRET/EiJ	ENSMSPG00010009197	pseudogene	Chr18:73767282-73767411 (+)
SPRET/EiJ	ENSMSPG00010048087	pseudogene	Chr2:28725880-28726011 (-)
SPRET/EiJ	ENSMSPG00010021330	pseudogene	Chr11:46192715-46192846 (+)
WSB/EiJ	ENSIUOG00005007971	pseudogene	Chr18:72717573-72717704 (+)

Homology

• Gene Tree
  Gm20570
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm20570
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000118164 (Evidence)
• NCBI Gene
  100048142

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118164	Ensembl Gene Model | MGI Sequence Detail	132	C57BL/6J
transcript	ENSMUST00000237826	Ensembl | MGI Sequence Detail	132	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm20570:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151978	Chr18:75900135-75900143 (+)	-75 bp
Tssr5375	Chr18:75900232-75900240 (+)	22 bp