Gm20568 Pseudogene Detail

Summary

• Symbol
  Gm20568
• Name
  predicted gene, 20568

• Feature Type
  pseudogene
• IDs
  MGI:5295675
  NCBI Gene: 108168897
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:126241392-126241599 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 55.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295675	pseudogene	Chr3:126241093-126241681 (+)
129S1/SvImJ	ENSMUSG00200003992	pseudogene	Chr3:122958755-122958962 (+)
A/J	ENSMUSG00195008578	pseudogene	Chr3:123095636-123095843 (+)
AKR/J	ENSMUSG00220023421	pseudogene	Chr3:121551625-121551832 (+)
BALB/cJ	ENSMUSG00180003936	pseudogene	Chr3:123026051-123026258 (+)
C3H/HeJ	ENSMUSG00175014392	pseudogene	Chr3:122572622-122572829 (+)
C57BL/6NJ	ENSMUSG00215025150	pseudogene	Chr3:123386403-123386610 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003831	pseudogene	Chr3:123639652-123639859 (+)
CBA/J	ENSMUSG00210004442	pseudogene	Chr3:123203048-123203255 (+)
DBA/2J	ENSMUSG00185026676	pseudogene	Chr3:123829401-123829608 (+)
FVB/NJ	ENSMUSG00205007583	pseudogene	Chr3:122184330-122184537 (+)
JF1/MsJ	ENSUMUG00000033285	pseudogene	Chr3:122570781-122570988 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001897	pseudogene	Chr3:124231824-124232031 (+)
NZO/HlLtJ	ENSMUSG00225003883	pseudogene	Chr3:128274078-128274285 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005017400	pseudogene	Chr3:123382459-123382666 (+)

Homology

• Gene Tree
  Gm20568
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20568
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000105233 (Evidence)
• NCBI Gene
  108168897

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105233	Ensembl Gene Model | MGI Sequence Detail	208	C57BL/6J
transcript	ENSMUST00000197129	Ensembl | MGI Sequence Detail	208	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm20568:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31564	Chr3:126241369-126241370 (+)	-22 bp