Gm20564 Pseudogene Detail

Summary

• Symbol
  Gm20564
• Name
  predicted gene, 20564

• Feature Type
  pseudogene
• IDs
  MGI:5295671
  NCBI Gene: 100046692
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:99813309-99813781 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 56.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295671	pseudogene	Chr15:99813272-99813819 (-)
129S1/SvImJ	ENSMUSG00200052685	pseudogene	Chr15:97015500-97015967 (-)
A/J	ENSMUSG00195046863	pseudogene	Chr15:96882540-96883012 (-)
AKR/J	ENSMUSG00220050471	pseudogene	Chr15:96889828-96890300 (-)
BALB/cJ	ENSMUSG00180048291	pseudogene	Chr15:96792289-96792761 (-)
C3H/HeJ	ENSMUSG00175048535	pseudogene	Chr15:97062552-97063024 (-)
C57BL/6NJ	ENSMUSG00215051492	pseudogene	Chr15:96851692-96852164 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047767	pseudogene	Chr15:96323974-96324446 (-)
CBA/J	ENSMUSG00210032040	pseudogene	Chr15:96849199-96849671 (-)
DBA/2J	ENSMUSG00185042714	pseudogene	Chr15:96896210-96896682 (-)
FVB/NJ	ENSMUSG00205047880	pseudogene	Chr15:96600694-96601166 (-)
JF1/MsJ	ENSUMUG00000057155	pseudogene	Chr15:96348753-96349220 (-)
LP/J	ENSMUSG00230041389	pseudogene	Chr15:100238866-100239333 (-)
NOD/ShiLtJ	ENSMUSG00190049711	pseudogene	Chr15:96866226-96866698 (-)
NZO/HlLtJ	ENSMUSG00225043194	pseudogene	Chr15:100488575-100489047 (-)
PWK/PhJ	ENSLUMG00010050612	pseudogene	Chr15:96571110-96571582 (-)
SPRET/EiJ	ENSMSPG00010050180	pseudogene	Chr15:98373409-98373878 (-)
WSB/EiJ	ENSIUOG00005042165	pseudogene	Chr15:96976837-96977309 (-)

Homology

• Gene Tree
  Gm20564
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20564
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116255 (Evidence)
• NCBI Gene
  100046692

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116255	Ensembl Gene Model | MGI Sequence Detail	473	C57BL/6J
transcript	ENSMUST00000230306	Ensembl | MGI Sequence Detail	473	Not Applicable

References

• Summaries
  All 21

  Phenotypes 18
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)

TSS for Gm20564:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr136405	Chr15:99813815-99813819 (-)	-36 bp