Gm20561 Pseudogene Detail

Summary

• Symbol
  Gm20561
• Name
  predicted gene, 20561

• Feature Type
  pseudogene
• IDs
  MGI:5295668
  NCBI Gene: 108167674
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:90789959-90790250 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 47.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295668	pseudogene	Chr9:90789955-90790252 (-)
129S1/SvImJ	ENSMUSG00200005979	pseudogene	Chr9:87907398-87907689 (-)
A/J	ENSMUSG00195007830	pseudogene	Chr9:87174969-87175260 (-)
AKR/J	ENSMUSG00220020233	pseudogene	Chr9:87589600-87589891 (-)
BALB/cJ	ENSMUSG00180007483	pseudogene	Chr9:87501576-87501867 (-)
C3H/HeJ	ENSMUSG00175004894	pseudogene	Chr9:87812986-87813277 (-)
C57BL/6NJ	ENSMUSG00215010269	pseudogene	Chr9:87797091-87797382 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012640	pseudogene	ChrX:46327588-46327874 (+)
CAST/EiJ	ENSTCUG00005004310	pseudogene	Chr9:87763623-87763914 (-)
CBA/J	ENSMUSG00210006439	pseudogene	Chr9:87675849-87676140 (-)
DBA/2J	ENSMUSG00185002242	pseudogene	Chr9:87817894-87818185 (-)
FVB/NJ	ENSMUSG00205005202	pseudogene	Chr9:87992797-87993088 (-)
JF1/MsJ	ENSUMUG00000033080	pseudogene	Chr9:87637547-87637838 (-)
LP/J	ENSMUSG00230010511	pseudogene	Chr9:88013800-88014091 (-)
NOD/ShiLtJ	ENSMUSG00190012003	pseudogene	Chr9:87463933-87464224 (-)
NZO/HlLtJ	ENSMUSG00225016437	pseudogene	Chr9:88118768-88119059 (-)
PWK/PhJ	ENSLUMG00010002930	pseudogene	Chr9:87573489-87573780 (-)
SPRET/EiJ	ENSMSPG00010002899	pseudogene	Chr9:89205504-89205795 (-)
WSB/EiJ	ENSIUOG00005003990	pseudogene	Chr9:86862656-86862947 (-)

Homology

• Gene Tree
  Gm20561
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20561
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000102076 (Evidence)
• NCBI Gene
  108167674

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102076	Ensembl Gene Model | MGI Sequence Detail	292	C57BL/6J
transcript	ENSMUST00000188131	Ensembl | MGI Sequence Detail	292	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;