Trav10d Gene Detail

Summary

• Symbol
  Trav10d
• Name
  T cell receptor alpha variable 10D

• Feature Type
  gene segment
• IDs
  MGI:5293417
  NCBI Gene: 100101486
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53048454-53048953 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.10 cM

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5293417	gene segment	Chr14:53048391-53048953 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0002500	gene segment	Chr14:45655639-45656188 (+)
AKR/J	MGP_AKRJ_G0002489	gene segment	Chr14:47304431-47304980 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0002487	gene segment	Chr14:44974011-44974560 (+)
LP/J	MGP_LPJ_G0002530	gene segment	Chr14:47515795-47516354 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002458	gene segment	Chr14:49915595-49916144 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002621	gene segment	Chr14:46635164-46635713 (+)
PWK/PhJ	MGP_PWKPhJ_G0002416	gene segment	Chr14:42166152-42166711 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002362	gene segment	Chr14:43106991-43124218 (+)
WSB/EiJ	no annotation

Homology

• Human Ortholog
  TRAV13-1, T cell receptor alpha variable 13-1

• Vertebrate Orthologs
  11

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV13-1, T cell receptor alpha variable 13-1
  
• Synonyms
  TCRAV13S1, TCRAV8S1, TRAV131
• Links
  HGNC:12108

  NCBI Gene ID: 28671

  UniProt: A0A0B4J241

  
  
• Chr Location
  14q11.2; chr14:21868839-21869365 (+)  GRCh38

---

• Human Ortholog
  TRAV13-2, T cell receptor alpha variable 13-2
  
• Synonyms
  TCRAV13S2, TCRAV8S2, TRAV132
• Links
  HGNC:12109

  NCBI Gene ID: 28670

  UniProt: A0A0B4J235

  
  
• Chr Location
  14q11.2; chr14:21918188-21918756 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav10d stringent orthology
  2 human;1 mouse;9 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV13-1, TRAV13-2
• Gene Tree
  Trav10d
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000094792 (Evidence)
• NCBI Gene
  100101486

Representative Sequences			Length	Strain/Species
genomic	100101486	NCBI Gene Model | MGI Sequence Detail	500	C57BL/6J
polypeptide	A0A075B642	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain

References

• Summaries
  All 5
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61