Gm20528 Gene Detail

Summary

• Symbol
  Gm20528
• Name
  predicted gene 20528

• Feature Type
  lncRNA gene
• IDs
  MGI:5141993
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:87983115-88146306 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 44.49 cM

Strain
Comparison

• SNPs within 2kb
  1343 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141993	lncRNA gene	Chr1:87983115-88146306 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015106	unclassified non-coding RNA gene	Chr1:89418087-89627964 (-)
A/J	MGP_AJ_G0015079	unclassified non-coding RNA gene	Chr1:86104869-86333664 (-)
AKR/J	MGP_AKRJ_G0015042	unclassified non-coding RNA gene	Chr1:88663409-88898066 (-)
BALB/cJ	MGP_BALBcJ_G0015042	unclassified non-coding RNA gene	Chr1:86273890-86471795 (-)
C3H/HeJ	MGP_C3HHeJ_G0014865	unclassified non-coding RNA gene	Chr1:88927996-89121924 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015499	unclassified non-coding RNA gene	Chr1:92988107-92996198 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013245	unclassified non-coding RNA gene	Chr1:80700833-80707424 (-)
CAST/EiJ	MGP_CASTEiJ_G0014420	unclassified non-coding RNA gene	Chr1:88094445-88338759 (-)
CBA/J	MGP_CBAJ_G0014844	unclassified non-coding RNA gene	Chr1:95710482-95995278 (-)
DBA/2J	MGP_DBA2J_G0014937	unclassified non-coding RNA gene	Chr1:85377514-85575120 (-)
FVB/NJ	MGP_FVBNJ_G0014949	unclassified non-coding RNA gene	Chr1:84464780-84658232 (-)
LP/J	MGP_LPJ_G0015020	unclassified non-coding RNA gene	Chr1:90479950-90703196 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014976	unclassified non-coding RNA gene	Chr1:98952704-99343983 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015537	unclassified non-coding RNA gene	Chr1:88751215-88953535 (-)
PWK/PhJ	MGP_PWKPhJ_G0014212	unclassified non-coding RNA gene	Chr1:84925852-84935342 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014001	unclassified non-coding RNA gene	Chr1:87639125-87875604 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm20528
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20528
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092220 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092220	Ensembl Gene Model | MGI Sequence Detail	163192	C57BL/6J
transcript	ENSMUST00000174821	Ensembl | MGI Sequence Detail	802	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm20528:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12869	Chr1:88141661-88141675 (-)	4,638 bp