Gm20528 Gene Detail

Summary

• Symbol
  Gm20528
• Name
  predicted gene 20528

• Feature Type
  lncRNA gene
• IDs
  MGI:5141993
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:87983115-88146306 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 44.49 cM

Strain
Comparison

• SNPs within 2kb
  4307 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141993	lncRNA gene	Chr1:87983115-88146306 (-)
129S1/SvImJ	ENSMUSG00200038985	lncRNA gene	Chr1:85205185-85388007 (-)
129S1/SvImJ	ENSMUSG00200003450	lncRNA gene	Chr1:144031-150623 (-)
A/J	ENSMUSG00195033549	lncRNA gene	Chr1:84765699-84948773 (-)
AKR/J	ENSMUSG00220046903	lncRNA gene	Chr1:84933490-85096692 (-)
BALB/cJ	ENSMUSG00180018625	lncRNA gene	Chr1:85072347-85235545 (-)
C3H/HeJ	ENSMUSG00175001692	lncRNA gene	Chr1:84951261-85114451 (-)
C57BL/6NJ	ENSMUSG00215037687	lncRNA gene	Chr1:84874267-85037175 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013245	unclassified non-coding RNA gene	Chr1:80700833-80707424 (-)
CAST/EiJ	ENSTCUG00005008009	lncRNA gene	Chr1:84506733-84691824 (-)
CBA/J	ENSMUSG00210012590	lncRNA gene	Chr1:84796566-84959746 (-)
DBA/2J	ENSMUSG00185004794	lncRNA gene	Chr1:149159-155746 (-)
DBA/2J	ENSMUSG00185017745	lncRNA gene	Chr1:89249994-89433075 (-)
DBA/2J	ENSMUSG00185004795	lncRNA gene	Chr1:793488-800453 (-)
FVB/NJ	ENSMUSG00205044570	lncRNA gene	Chr1:84199753-84382505 (-)
JF1/MsJ	ENSUMUG00000022933	lncRNA gene	Chr1:88011544-88197963 (-)
LP/J	ENSMUSG00230022587	lncRNA gene	Chr1:88541257-88724322 (-)
LP/J	ENSMUSG00230008723	lncRNA gene	Chr4:1891600-1898187 (-)
LP/J	ENSMUSG00230002774	lncRNA gene	Chr1:903632-910231 (-)
NOD/ShiLtJ	ENSMUSG00190034902	lncRNA gene	Chr1:84840523-85023364 (-)
NZO/HlLtJ	ENSMUSG00225000281	lncRNA gene	Chr1:2916534-2923101 (-)
NZO/HlLtJ	ENSMUSG00225000282	lncRNA gene	Chr1:3169321-3175888 (-)
NZO/HlLtJ	ENSMUSG00225000283	lncRNA gene	Chr1:3715351-3721931 (-)
NZO/HlLtJ	ENSMUSG00225004327	lncRNA gene	Chr1:92437424-92620504 (-)
NZO/HlLtJ	ENSMUSG00225000984	lncRNA gene	Chr4:5857788-5864375 (-)
PWK/PhJ	ENSLUMG00010047804	lncRNA gene	Chr1:84400521-84588828 (-)
SPRET/EiJ	ENSMSPG00010047769	lncRNA gene	Chr1:86421499-86616576 (-)
WSB/EiJ	ENSIUOG00005044429	lncRNA gene	Chr1:84429280-84616369 (-)

Homology

• Gene Tree
  Gm20528
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20528
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000092220 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092220	Ensembl Gene Model | MGI Sequence Detail	163192	C57BL/6J
transcript	ENSMUST00000174821	Ensembl | MGI Sequence Detail	802	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm20528:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12869	Chr1:88141661-88141675 (-)	4,638 bp