Gm44503 Gene Detail

Summary

• Symbol
  Gm44503
• Name
  predicted readthrough transcript (NMD candidate), 44503
• Synonyms
  Dyx1c1Ccpg1, Gm20510

• Feature Type
  protein coding gene
• IDs
  MGI:5141975
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr9:72866134-72923601 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 40.08 cM

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141975	protein coding gene	Chr9:72866134-72923601 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035021	protein coding gene	Chr9:73161030-73222782 (+)
A/J	MGP_AJ_G0035002	protein coding gene	Chr9:70603833-70661113 (+)
AKR/J	MGP_AKRJ_G0034931	protein coding gene	Chr9:72297999-72354257 (+)
BALB/cJ	MGP_BALBcJ_G0034994	protein coding gene	Chr9:70310992-70368483 (+)
C3H/HeJ	MGP_C3HHeJ_G0034703	protein coding gene	Chr9:72787863-72847747 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035513	protein coding gene	Chr9:75085191-75144388 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032424	protein coding gene	Chr9:70079134-70131840 (+)
CAST/EiJ	MGP_CASTEiJ_G0034025	protein coding gene	Chr9:73125858-73187439 (+)
CBA/J	MGP_CBAJ_G0034676	protein coding gene	Chr9:77705534-77759664 (+)
DBA/2J	MGP_DBA2J_G0034835	protein coding gene	Chr9:70321491-70377912 (+)
FVB/NJ	MGP_FVBNJ_G0034777	protein coding gene	Chr9:69632168-69687212 (+)
LP/J	MGP_LPJ_G0034916	protein coding gene	Chr9:73387825-73441890 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034818	protein coding gene	Chr9:78783368-78842459 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035535	protein coding gene	Chr9:72448663-72509244 (+)
PWK/PhJ	MGP_PWKPhJ_G0033729	protein coding gene	Chr9:70600034-70654952 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033562	protein coding gene	Chr9:72739522-72794026 (+)
WSB/EiJ	MGP_WSBEiJ_G0034137	protein coding gene	Chr9:72385436-72443075 (+)

Homology

• Gene Tree
  Gm44503
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm44503
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000089865 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089865	Ensembl Gene Model | MGI Sequence Detail	57468	C57BL/6J
transcript	ENSMUST00000149692	Ensembl | MGI Sequence Detail	4383	Not Applicable
polypeptide	ENSMUSP00000120629	Ensembl | MGI Sequence Detail	387	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007052 CS domain
  IPR037894 Dynein axonemal assembly factor 4, CS domain
  IPR008978 HSP20-like chaperone
  IPR011990 Tetratricopeptide-like helical domain superfamily
  IPR019734 Tetratricopeptide repeat

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44503:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86061	Chr9:72866094-72866132 (+)	-21 bp
Tssr86062	Chr9:72866135-72866146 (+)	7 bp
Tssr86063	Chr9:72866293-72866303 (+)	164 bp
Tssr86064	Chr9:72869443-72869477 (+)	3,326 bp
Tssr2934	Chr9:72877490-72877499 (+)	11,361 bp
Tssr86065	Chr9:72877517-72877528 (+)	11,389 bp