Gm20508 Gene Detail

Summary

• Symbol
  Gm20508
• Name
  predicted gene 20508

• Feature Type
  lncRNA gene
• IDs
  MGI:5141973
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:36302759-36304919 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.83 cM

Strain
Comparison

• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141973	lncRNA gene	Chr17:36302759-36304919 (+)
129S1/SvImJ	ENSMUSG00200051941	lncRNA gene	Chr17:31928082-31929953 (+)
A/J	ENSMUSG00195048011	lncRNA gene	Chr17:32990618-32992510 (+)
AKR/J	ENSMUSG00220052276	lncRNA gene	Chr17:31791729-31793616 (+)
BALB/cJ	ENSMUSG00180043773	lncRNA gene	Chr17:32359557-32361434 (+)
C3H/HeJ	ENSMUSG00175043693	lncRNA gene	Chr17:31677563-31679454 (+)
C57BL/6NJ	ENSMUSG00215053917	lncRNA gene	Chr17:31753332-31755205 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005211	lincRNA gene	Chr17:33070266-33072130 (+)
CAST/EiJ	ENSTCUG00005052409	lncRNA gene	Chr17:32819105-32821014 (+)
CBA/J	ENSMUSG00210052198	lncRNA gene	Chr17:31499598-31501481 (+)
DBA/2J	ENSMUSG00185055653	lncRNA gene	Chr17:34378707-34380586 (+)
FVB/NJ	ENSMUSG00205053572	lncRNA gene	Chr17:32046800-32048692 (+)
JF1/MsJ	ENSUMUG00000057234	lncRNA gene	Chr17:33339343-33341276 (+)
LP/J	ENSMUSG00230054841	lncRNA gene	Chr17:35416756-35418627 (+)
NOD/ShiLtJ	ENSMUSG00190053800	lncRNA gene	Chr17:31665909-31667801 (+)
NZO/HlLtJ	ENSMUSG00225054988	lncRNA gene	Chr17:37503577-37505468 (+)
PWK/PhJ	ENSLUMG00010046246	lncRNA gene	Chr17:31297788-31299671 (+)
SPRET/EiJ	ENSMSPG00010050778	lncRNA gene	Chr17:32511145-32513003 (+)
WSB/EiJ	ENSIUOG00005051569	lncRNA gene	Chr17:32481969-32483858 (+)

Homology

• Gene Tree
  Gm20508
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm20508
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000092604 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092604	Ensembl Gene Model | MGI Sequence Detail	2161	C57BL/6J
transcript	ENSMUST00000380222	Ensembl | MGI Sequence Detail	606	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53